Strain Fitness in Methanococcus maripaludis S2 around MMP_RS01930

Experiment: H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2, SO4 & Casamino Acid FREE

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS01925 and MMP_RS01930 are separated by 1 nucleotidesMMP_RS01930 and MMP_RS01935 overlap by 4 nucleotides MMP_RS01925: MMP_RS01925 - DUF1616 domain-containing protein, at 356,729 to 357,700 _RS01925 MMP_RS01930: MMP_RS01930 - hypothetical protein, at 357,702 to 358,256 _RS01930 MMP_RS01935: MMP_RS01935 - DUF58 domain-containing protein, at 358,253 to 359,554 _RS01935 Position (kb) 357 358 359Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 356.704 kb on + strandat 356.713 kb on - strandat 356.714 kb on + strandat 356.718 kb on - strandat 356.719 kb on + strandat 356.725 kb on - strandat 356.961 kb on - strand, within MMP_RS01925at 357.007 kb on + strand, within MMP_RS01925at 357.010 kb on - strand, within MMP_RS01925at 357.042 kb on - strand, within MMP_RS01925at 357.042 kb on - strand, within MMP_RS01925at 357.062 kb on - strand, within MMP_RS01925at 357.062 kb on - strand, within MMP_RS01925at 357.062 kb on - strand, within MMP_RS01925at 357.064 kb on - strand, within MMP_RS01925at 357.065 kb on + strand, within MMP_RS01925at 357.065 kb on + strand, within MMP_RS01925at 357.065 kb on + strand, within MMP_RS01925at 357.074 kb on + strand, within MMP_RS01925at 357.079 kb on + strand, within MMP_RS01925at 357.171 kb on - strand, within MMP_RS01925at 357.222 kb on - strand, within MMP_RS01925at 357.287 kb on - strand, within MMP_RS01925at 357.287 kb on - strand, within MMP_RS01925at 357.288 kb on + strand, within MMP_RS01925at 357.343 kb on + strand, within MMP_RS01925at 357.404 kb on - strand, within MMP_RS01925at 357.405 kb on + strand, within MMP_RS01925at 357.409 kb on - strand, within MMP_RS01925at 357.417 kb on - strand, within MMP_RS01925at 357.417 kb on - strand, within MMP_RS01925at 357.431 kb on + strand, within MMP_RS01925at 357.431 kb on + strand, within MMP_RS01925at 357.443 kb on - strand, within MMP_RS01925at 357.443 kb on - strand, within MMP_RS01925at 357.443 kb on - strand, within MMP_RS01925at 357.445 kb on - strand, within MMP_RS01925at 357.446 kb on + strand, within MMP_RS01925at 357.466 kb on - strand, within MMP_RS01925at 357.490 kb on - strand, within MMP_RS01925at 357.536 kb on + strand, within MMP_RS01925at 357.573 kb on - strand, within MMP_RS01925at 357.574 kb on + strand, within MMP_RS01925at 357.707 kb on - strandat 357.856 kb on + strand, within MMP_RS01930at 357.858 kb on - strand, within MMP_RS01930at 357.859 kb on + strand, within MMP_RS01930at 357.875 kb on - strand, within MMP_RS01930at 357.879 kb on - strand, within MMP_RS01930at 357.924 kb on - strand, within MMP_RS01930at 357.925 kb on + strand, within MMP_RS01930at 357.926 kb on - strand, within MMP_RS01930at 357.926 kb on - strand, within MMP_RS01930at 357.926 kb on - strand, within MMP_RS01930at 357.927 kb on + strand, within MMP_RS01930at 357.928 kb on - strand, within MMP_RS01930at 357.928 kb on - strand, within MMP_RS01930at 357.928 kb on - strand, within MMP_RS01930at 357.928 kb on - strand, within MMP_RS01930at 357.928 kb on - strand, within MMP_RS01930at 357.928 kb on - strand, within MMP_RS01930at 357.929 kb on + strand, within MMP_RS01930at 357.930 kb on - strand, within MMP_RS01930at 357.930 kb on - strand, within MMP_RS01930at 357.931 kb on + strand, within MMP_RS01930at 357.957 kb on - strand, within MMP_RS01930at 357.958 kb on + strand, within MMP_RS01930at 357.966 kb on - strand, within MMP_RS01930at 357.972 kb on - strand, within MMP_RS01930at 357.972 kb on - strand, within MMP_RS01930at 357.973 kb on + strand, within MMP_RS01930at 357.973 kb on + strand, within MMP_RS01930at 357.973 kb on + strand, within MMP_RS01930at 357.973 kb on + strand, within MMP_RS01930at 357.973 kb on + strand, within MMP_RS01930at 357.973 kb on + strand, within MMP_RS01930at 357.975 kb on - strand, within MMP_RS01930at 357.976 kb on + strand, within MMP_RS01930at 357.976 kb on + strand, within MMP_RS01930at 357.976 kb on + strand, within MMP_RS01930at 357.977 kb on - strand, within MMP_RS01930at 357.977 kb on - strand, within MMP_RS01930at 357.978 kb on + strand, within MMP_RS01930at 357.978 kb on + strand, within MMP_RS01930at 357.981 kb on - strand, within MMP_RS01930at 357.982 kb on + strand, within MMP_RS01930at 358.011 kb on - strand, within MMP_RS01930at 358.012 kb on + strand, within MMP_RS01930at 358.023 kb on - strand, within MMP_RS01930at 358.028 kb on - strand, within MMP_RS01930at 358.028 kb on - strand, within MMP_RS01930at 358.053 kb on + strand, within MMP_RS01930at 358.058 kb on - strand, within MMP_RS01930at 358.058 kb on - strand, within MMP_RS01930at 358.058 kb on - strand, within MMP_RS01930at 358.062 kb on - strand, within MMP_RS01930at 358.115 kb on + strand, within MMP_RS01930at 358.115 kb on + strand, within MMP_RS01930at 358.164 kb on + strand, within MMP_RS01930at 358.165 kb on - strand, within MMP_RS01930at 358.165 kb on - strand, within MMP_RS01930at 358.166 kb on + strand, within MMP_RS01930at 358.204 kb on - strandat 358.240 kb on + strandat 358.247 kb on - strandat 358.247 kb on - strandat 358.271 kb on - strandat 358.271 kb on - strandat 358.272 kb on + strandat 358.272 kb on + strandat 358.283 kb on - strandat 358.299 kb on + strandat 358.366 kb on + strandat 358.431 kb on + strand, within MMP_RS01935at 358.504 kb on - strand, within MMP_RS01935at 358.523 kb on + strand, within MMP_RS01935at 358.523 kb on + strand, within MMP_RS01935at 358.536 kb on - strand, within MMP_RS01935at 358.537 kb on + strand, within MMP_RS01935at 358.618 kb on - strand, within MMP_RS01935at 358.621 kb on - strand, within MMP_RS01935at 358.665 kb on + strand, within MMP_RS01935at 358.670 kb on + strand, within MMP_RS01935at 358.678 kb on - strand, within MMP_RS01935at 358.679 kb on + strand, within MMP_RS01935at 358.725 kb on + strand, within MMP_RS01935at 358.725 kb on + strand, within MMP_RS01935at 358.782 kb on - strand, within MMP_RS01935at 358.783 kb on + strand, within MMP_RS01935at 358.785 kb on - strand, within MMP_RS01935at 358.785 kb on - strand, within MMP_RS01935at 358.785 kb on - strand, within MMP_RS01935at 358.786 kb on + strand, within MMP_RS01935at 358.786 kb on + strand, within MMP_RS01935at 358.787 kb on - strand, within MMP_RS01935at 358.788 kb on + strand, within MMP_RS01935at 358.811 kb on - strand, within MMP_RS01935at 358.816 kb on + strand, within MMP_RS01935at 358.816 kb on + strand, within MMP_RS01935at 358.862 kb on + strand, within MMP_RS01935at 358.864 kb on - strand, within MMP_RS01935at 358.865 kb on + strand, within MMP_RS01935at 358.957 kb on - strand, within MMP_RS01935at 358.992 kb on + strand, within MMP_RS01935at 358.992 kb on + strand, within MMP_RS01935at 359.090 kb on + strand, within MMP_RS01935at 359.117 kb on + strand, within MMP_RS01935at 359.174 kb on - strand, within MMP_RS01935at 359.174 kb on - strand, within MMP_RS01935at 359.195 kb on - strand, within MMP_RS01935

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2, SO4 & Casamino Acid FREE
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356,704 + -2.6
356,713 - +0.7
356,714 + -4.7
356,718 - -3.2
356,719 + -5.2
356,725 - -1.7
356,961 - MMP_RS01925 0.24 -4.0
357,007 + MMP_RS01925 0.29 -2.6
357,010 - MMP_RS01925 0.29 -3.4
357,042 - MMP_RS01925 0.32 -2.7
357,042 - MMP_RS01925 0.32 -2.4
357,062 - MMP_RS01925 0.34 -1.5
357,062 - MMP_RS01925 0.34 -1.9
357,062 - MMP_RS01925 0.34 -2.2
357,064 - MMP_RS01925 0.34 -2.9
357,065 + MMP_RS01925 0.35 -2.2
357,065 + MMP_RS01925 0.35 -0.9
357,065 + MMP_RS01925 0.35 -3.4
357,074 + MMP_RS01925 0.35 -2.0
357,079 + MMP_RS01925 0.36 -3.5
357,171 - MMP_RS01925 0.45 +0.5
357,222 - MMP_RS01925 0.51 -2.6
357,287 - MMP_RS01925 0.57 -2.2
357,287 - MMP_RS01925 0.57 -2.8
357,288 + MMP_RS01925 0.58 -0.9
357,343 + MMP_RS01925 0.63 -3.6
357,404 - MMP_RS01925 0.69 -3.7
357,405 + MMP_RS01925 0.70 -1.0
357,409 - MMP_RS01925 0.70 -2.3
357,417 - MMP_RS01925 0.71 -2.2
357,417 - MMP_RS01925 0.71 -2.1
357,431 + MMP_RS01925 0.72 -2.8
357,431 + MMP_RS01925 0.72 -1.9
357,443 - MMP_RS01925 0.73 -5.8
357,443 - MMP_RS01925 0.73 -2.3
357,443 - MMP_RS01925 0.73 -0.9
357,445 - MMP_RS01925 0.74 -2.9
357,446 + MMP_RS01925 0.74 -3.2
357,466 - MMP_RS01925 0.76 -2.4
357,490 - MMP_RS01925 0.78 -3.5
357,536 + MMP_RS01925 0.83 -2.5
357,573 - MMP_RS01925 0.87 -1.3
357,574 + MMP_RS01925 0.87 -3.3
357,707 - -0.1
357,856 + MMP_RS01930 0.28 -4.3
357,858 - MMP_RS01930 0.28 -1.9
357,859 + MMP_RS01930 0.28 -0.2
357,875 - MMP_RS01930 0.31 -0.2
357,879 - MMP_RS01930 0.32 -2.0
357,924 - MMP_RS01930 0.40 -2.2
357,925 + MMP_RS01930 0.40 -4.8
357,926 - MMP_RS01930 0.40 -1.9
357,926 - MMP_RS01930 0.40 -3.2
357,926 - MMP_RS01930 0.40 -2.2
357,927 + MMP_RS01930 0.41 -1.7
357,928 - MMP_RS01930 0.41 -2.5
357,928 - MMP_RS01930 0.41 -2.6
357,928 - MMP_RS01930 0.41 -2.7
357,928 - MMP_RS01930 0.41 -2.9
357,928 - MMP_RS01930 0.41 -2.5
357,928 - MMP_RS01930 0.41 -2.4
357,929 + MMP_RS01930 0.41 -3.3
357,930 - MMP_RS01930 0.41 -3.2
357,930 - MMP_RS01930 0.41 -4.3
357,931 + MMP_RS01930 0.41 -3.9
357,957 - MMP_RS01930 0.46 -2.4
357,958 + MMP_RS01930 0.46 -2.9
357,966 - MMP_RS01930 0.48 -3.8
357,972 - MMP_RS01930 0.49 -4.4
357,972 - MMP_RS01930 0.49 -3.1
357,973 + MMP_RS01930 0.49 -1.7
357,973 + MMP_RS01930 0.49 -2.7
357,973 + MMP_RS01930 0.49 -2.0
357,973 + MMP_RS01930 0.49 -2.3
357,973 + MMP_RS01930 0.49 -3.1
357,973 + MMP_RS01930 0.49 -3.3
357,975 - MMP_RS01930 0.49 -3.0
357,976 + MMP_RS01930 0.49 -2.7
357,976 + MMP_RS01930 0.49 -2.5
357,976 + MMP_RS01930 0.49 -5.3
357,977 - MMP_RS01930 0.50 -2.5
357,977 - MMP_RS01930 0.50 -2.9
357,978 + MMP_RS01930 0.50 -3.1
357,978 + MMP_RS01930 0.50 -4.6
357,981 - MMP_RS01930 0.50 -3.7
357,982 + MMP_RS01930 0.50 -2.8
358,011 - MMP_RS01930 0.56 -2.6
358,012 + MMP_RS01930 0.56 -2.9
358,023 - MMP_RS01930 0.58 +0.8
358,028 - MMP_RS01930 0.59 -2.2
358,028 - MMP_RS01930 0.59 -4.3
358,053 + MMP_RS01930 0.63 -3.1
358,058 - MMP_RS01930 0.64 -2.4
358,058 - MMP_RS01930 0.64 -3.6
358,058 - MMP_RS01930 0.64 -2.3
358,062 - MMP_RS01930 0.65 -2.9
358,115 + MMP_RS01930 0.74 -4.0
358,115 + MMP_RS01930 0.74 -3.1
358,164 + MMP_RS01930 0.83 -2.0
358,165 - MMP_RS01930 0.83 -2.8
358,165 - MMP_RS01930 0.83 -2.8
358,166 + MMP_RS01930 0.84 -3.7
358,204 - -3.2
358,240 + -2.3
358,247 - -4.0
358,247 - -2.7
358,271 - -1.4
358,271 - -1.3
358,272 + -0.4
358,272 + -1.3
358,283 - -2.8
358,299 + -2.0
358,366 + +1.2
358,431 + MMP_RS01935 0.14 -3.8
358,504 - MMP_RS01935 0.19 -2.8
358,523 + MMP_RS01935 0.21 -3.5
358,523 + MMP_RS01935 0.21 -3.7
358,536 - MMP_RS01935 0.22 -4.5
358,537 + MMP_RS01935 0.22 -5.4
358,618 - MMP_RS01935 0.28 -4.0
358,621 - MMP_RS01935 0.28 -2.8
358,665 + MMP_RS01935 0.32 -4.6
358,670 + MMP_RS01935 0.32 -4.2
358,678 - MMP_RS01935 0.33 -3.9
358,679 + MMP_RS01935 0.33 -2.7
358,725 + MMP_RS01935 0.36 -2.3
358,725 + MMP_RS01935 0.36 -2.4
358,782 - MMP_RS01935 0.41 -2.7
358,783 + MMP_RS01935 0.41 +1.0
358,785 - MMP_RS01935 0.41 -3.3
358,785 - MMP_RS01935 0.41 -3.3
358,785 - MMP_RS01935 0.41 -3.0
358,786 + MMP_RS01935 0.41 -3.6
358,786 + MMP_RS01935 0.41 -2.9
358,787 - MMP_RS01935 0.41 -4.7
358,788 + MMP_RS01935 0.41 -3.8
358,811 - MMP_RS01935 0.43 -4.6
358,816 + MMP_RS01935 0.43 -3.4
358,816 + MMP_RS01935 0.43 -4.3
358,862 + MMP_RS01935 0.47 -4.4
358,864 - MMP_RS01935 0.47 -2.9
358,865 + MMP_RS01935 0.47 -3.5
358,957 - MMP_RS01935 0.54 -2.8
358,992 + MMP_RS01935 0.57 -0.5
358,992 + MMP_RS01935 0.57 -2.1
359,090 + MMP_RS01935 0.64 +1.0
359,117 + MMP_RS01935 0.66 -3.0
359,174 - MMP_RS01935 0.71 -2.0
359,174 - MMP_RS01935 0.71 -1.5
359,195 - MMP_RS01935 0.72 -3.6

Or see this region's nucleotide sequence