Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_3926 and Ga0059261_3927 are separated by 139 nucleotides Ga0059261_3927 and Ga0059261_3928 are separated by 114 nucleotides Ga0059261_3928 and Ga0059261_3929 are separated by 3 nucleotides Ga0059261_3929 and Ga0059261_3930 are separated by 54 nucleotides
Ga0059261_3926: Ga0059261_3926 - L-proline dehydrogenase (EC 1.5.99.8)/delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12), at 4,040,617 to 4,044,216
_3926
Ga0059261_3927: Ga0059261_3927 - hypothetical protein, at 4,044,356 to 4,045,480
_3927
Ga0059261_3928: Ga0059261_3928 - Predicted thioesterase, at 4,045,595 to 4,046,005
_3928
Ga0059261_3929: Ga0059261_3929 - hypothetical protein, at 4,046,009 to 4,046,092
_3929
Ga0059261_3930: Ga0059261_3930 - Putative protein-S-isoprenylcysteine methyltransferase, at 4,046,147 to 4,046,647
_3930
Position (kb) 4044
4045
4046 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4043.413 kb on + strand, within Ga0059261_3926 at 4043.413 kb on + strand, within Ga0059261_3926 at 4043.413 kb on + strand at 4043.413 kb on + strand, within Ga0059261_3926 at 4043.414 kb on - strand, within Ga0059261_3926 at 4043.414 kb on - strand, within Ga0059261_3926 at 4043.546 kb on - strand, within Ga0059261_3926 at 4043.546 kb on - strand, within Ga0059261_3926 at 4043.546 kb on - strand, within Ga0059261_3926 at 4043.546 kb on - strand, within Ga0059261_3926 at 4043.641 kb on + strand, within Ga0059261_3926 at 4043.642 kb on - strand, within Ga0059261_3926 at 4043.684 kb on + strand, within Ga0059261_3926 at 4043.685 kb on - strand, within Ga0059261_3926 at 4043.827 kb on + strand, within Ga0059261_3926 at 4043.827 kb on + strand, within Ga0059261_3926 at 4043.828 kb on - strand, within Ga0059261_3926 at 4044.214 kb on + strand at 4044.214 kb on + strand at 4044.215 kb on - strand at 4044.215 kb on - strand at 4044.215 kb on - strand at 4044.215 kb on - strand at 4044.378 kb on + strand at 4044.379 kb on - strand at 4044.379 kb on - strand at 4044.405 kb on + strand at 4044.405 kb on + strand at 4044.406 kb on - strand at 4044.459 kb on + strand at 4044.459 kb on + strand at 4044.459 kb on + strand at 4044.459 kb on + strand at 4044.459 kb on + strand at 4044.459 kb on + strand at 4044.459 kb on + strand at 4044.460 kb on - strand at 4044.460 kb on - strand at 4044.460 kb on - strand at 4044.460 kb on - strand at 4044.543 kb on + strand, within Ga0059261_3927 at 4044.543 kb on + strand, within Ga0059261_3927 at 4044.543 kb on + strand, within Ga0059261_3927 at 4044.544 kb on - strand, within Ga0059261_3927 at 4044.544 kb on - strand, within Ga0059261_3927 at 4044.627 kb on + strand, within Ga0059261_3927 at 4044.627 kb on + strand, within Ga0059261_3927 at 4044.627 kb on + strand, within Ga0059261_3927 at 4044.627 kb on + strand, within Ga0059261_3927 at 4044.627 kb on + strand, within Ga0059261_3927 at 4044.627 kb on + strand, within Ga0059261_3927 at 4044.628 kb on - strand, within Ga0059261_3927 at 4044.628 kb on - strand, within Ga0059261_3927 at 4044.628 kb on - strand, within Ga0059261_3927 at 4044.628 kb on - strand, within Ga0059261_3927 at 4044.628 kb on - strand, within Ga0059261_3927 at 4044.628 kb on - strand, within Ga0059261_3927 at 4044.628 kb on - strand, within Ga0059261_3927 at 4044.628 kb on - strand, within Ga0059261_3927 at 4044.631 kb on + strand, within Ga0059261_3927 at 4044.631 kb on + strand, within Ga0059261_3927 at 4044.631 kb on + strand, within Ga0059261_3927 at 4044.631 kb on + strand, within Ga0059261_3927 at 4044.631 kb on + strand, within Ga0059261_3927 at 4044.631 kb on + strand, within Ga0059261_3927 at 4044.631 kb on + strand, within Ga0059261_3927 at 4044.631 kb on + strand, within Ga0059261_3927 at 4044.631 kb on + strand, within Ga0059261_3927 at 4044.631 kb on + strand, within Ga0059261_3927 at 4044.631 kb on + strand, within Ga0059261_3927 at 4044.631 kb on + strand, within Ga0059261_3927 at 4044.631 kb on + strand, within Ga0059261_3927 at 4044.631 kb on + strand, within Ga0059261_3927 at 4044.631 kb on + strand, within Ga0059261_3927 at 4044.632 kb on - strand, within Ga0059261_3927 at 4044.632 kb on - strand, within Ga0059261_3927 at 4044.632 kb on - strand, within Ga0059261_3927 at 4044.632 kb on - strand, within Ga0059261_3927 at 4044.632 kb on - strand, within Ga0059261_3927 at 4044.632 kb on - strand, within Ga0059261_3927 at 4044.632 kb on - strand, within Ga0059261_3927 at 4044.632 kb on - strand, within Ga0059261_3927 at 4044.633 kb on + strand, within Ga0059261_3927 at 4044.633 kb on + strand, within Ga0059261_3927 at 4044.633 kb on + strand, within Ga0059261_3927 at 4044.633 kb on + strand, within Ga0059261_3927 at 4044.633 kb on + strand, within Ga0059261_3927 at 4044.633 kb on + strand, within Ga0059261_3927 at 4044.633 kb on + strand, within Ga0059261_3927 at 4044.633 kb on + strand, within Ga0059261_3927 at 4044.633 kb on + strand, within Ga0059261_3927 at 4044.633 kb on + strand, within Ga0059261_3927 at 4044.633 kb on + strand, within Ga0059261_3927 at 4044.633 kb on + strand, within Ga0059261_3927 at 4044.633 kb on + strand, within Ga0059261_3927 at 4044.633 kb on + strand, within Ga0059261_3927 at 4044.633 kb on + strand, within Ga0059261_3927 at 4044.633 kb on + strand, within Ga0059261_3927 at 4044.633 kb on + strand, within Ga0059261_3927 at 4044.634 kb on - strand, within Ga0059261_3927 at 4044.634 kb on - strand, within Ga0059261_3927 at 4044.634 kb on - strand, within Ga0059261_3927 at 4044.634 kb on - strand, within Ga0059261_3927 at 4044.634 kb on - strand, within Ga0059261_3927 at 4044.634 kb on - strand, within Ga0059261_3927 at 4044.634 kb on - strand, within Ga0059261_3927 at 4044.634 kb on - strand, within Ga0059261_3927 at 4044.634 kb on - strand, within Ga0059261_3927 at 4045.096 kb on - strand, within Ga0059261_3927 at 4045.096 kb on - strand, within Ga0059261_3927 at 4045.104 kb on + strand, within Ga0059261_3927 at 4045.105 kb on - strand, within Ga0059261_3927 at 4045.105 kb on - strand, within Ga0059261_3927 at 4045.381 kb on + strand at 4045.381 kb on + strand at 4045.382 kb on - strand at 4045.511 kb on - strand at 4045.579 kb on - strand at 4045.584 kb on - strand at 4045.657 kb on + strand, within Ga0059261_3928 at 4045.658 kb on - strand, within Ga0059261_3928 at 4045.682 kb on + strand, within Ga0059261_3928 at 4045.683 kb on - strand, within Ga0059261_3928 at 4045.683 kb on - strand, within Ga0059261_3928 at 4045.683 kb on - strand, within Ga0059261_3928 at 4045.695 kb on + strand, within Ga0059261_3928 at 4045.696 kb on - strand, within Ga0059261_3928 at 4045.787 kb on + strand, within Ga0059261_3928 at 4045.788 kb on - strand, within Ga0059261_3928 at 4045.865 kb on + strand, within Ga0059261_3928 at 4045.969 kb on + strand at 4045.969 kb on + strand at 4045.970 kb on - strand at 4045.970 kb on - strand at 4045.970 kb on - strand at 4046.150 kb on + strand at 4046.151 kb on - strand at 4046.182 kb on + strand at 4046.184 kb on + strand at 4046.184 kb on + strand at 4046.184 kb on + strand at 4046.184 kb on + strand at 4046.184 kb on + strand at 4046.184 kb on + strand at 4046.185 kb on - strand at 4046.185 kb on - strand at 4046.185 kb on - strand at 4046.185 kb on - strand at 4046.185 kb on - strand at 4046.185 kb on - strand at 4046.185 kb on - strand at 4046.185 kb on - strand at 4046.185 kb on - strand at 4046.185 kb on - strand at 4046.185 kb on - strand at 4046.211 kb on + strand, within Ga0059261_3930 at 4046.211 kb on + strand, within Ga0059261_3930 at 4046.211 kb on + strand, within Ga0059261_3930 at 4046.211 kb on + strand, within Ga0059261_3930 at 4046.211 kb on + strand, within Ga0059261_3930 at 4046.212 kb on - strand, within Ga0059261_3930 at 4046.212 kb on - strand, within Ga0059261_3930 at 4046.212 kb on - strand, within Ga0059261_3930 at 4046.238 kb on + strand, within Ga0059261_3930 at 4046.238 kb on + strand, within Ga0059261_3930 at 4046.313 kb on + strand, within Ga0059261_3930 at 4046.313 kb on + strand, within Ga0059261_3930 at 4046.313 kb on + strand, within Ga0059261_3930 at 4046.313 kb on + strand at 4046.313 kb on + strand, within Ga0059261_3930 at 4046.313 kb on + strand, within Ga0059261_3930 at 4046.313 kb on + strand, within Ga0059261_3930 at 4046.313 kb on + strand, within Ga0059261_3930 at 4046.314 kb on - strand, within Ga0059261_3930 at 4046.314 kb on - strand, within Ga0059261_3930 at 4046.317 kb on + strand, within Ga0059261_3930 at 4046.317 kb on + strand, within Ga0059261_3930 at 4046.317 kb on + strand, within Ga0059261_3930 at 4046.317 kb on + strand, within Ga0059261_3930 at 4046.317 kb on + strand, within Ga0059261_3930 at 4046.317 kb on + strand, within Ga0059261_3930 at 4046.317 kb on + strand, within Ga0059261_3930 at 4046.317 kb on + strand, within Ga0059261_3930 at 4046.317 kb on + strand, within Ga0059261_3930 at 4046.317 kb on + strand, within Ga0059261_3930 at 4046.318 kb on - strand, within Ga0059261_3930 at 4046.318 kb on - strand, within Ga0059261_3930 at 4046.318 kb on - strand, within Ga0059261_3930 at 4046.318 kb on - strand, within Ga0059261_3930 at 4046.318 kb on - strand, within Ga0059261_3930 at 4046.318 kb on - strand, within Ga0059261_3930 at 4046.318 kb on - strand, within Ga0059261_3930 at 4046.318 kb on - strand, within Ga0059261_3930 at 4046.334 kb on + strand, within Ga0059261_3930 at 4046.334 kb on + strand, within Ga0059261_3930 at 4046.334 kb on + strand, within Ga0059261_3930 at 4046.334 kb on + strand, within Ga0059261_3930 at 4046.335 kb on - strand, within Ga0059261_3930 at 4046.335 kb on - strand, within Ga0059261_3930 at 4046.335 kb on - strand, within Ga0059261_3930 at 4046.335 kb on - strand, within Ga0059261_3930 at 4046.358 kb on + strand, within Ga0059261_3930 at 4046.358 kb on + strand, within Ga0059261_3930 at 4046.358 kb on + strand, within Ga0059261_3930 at 4046.358 kb on + strand, within Ga0059261_3930 at 4046.358 kb on + strand, within Ga0059261_3930 at 4046.358 kb on + strand, within Ga0059261_3930 at 4046.359 kb on - strand, within Ga0059261_3930 at 4046.411 kb on - strand, within Ga0059261_3930 at 4046.467 kb on + strand, within Ga0059261_3930 at 4046.468 kb on - strand, within Ga0059261_3930
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 4,043,413 + Ga0059261_3926 0.78 -0.5 4,043,413 + Ga0059261_3926 0.78 +0.1 4,043,413 + -1.4 4,043,413 + Ga0059261_3926 0.78 -0.9 4,043,414 - Ga0059261_3926 0.78 -1.4 4,043,414 - Ga0059261_3926 0.78 +1.4 4,043,546 - Ga0059261_3926 0.81 -0.2 4,043,546 - Ga0059261_3926 0.81 -0.7 4,043,546 - Ga0059261_3926 0.81 -0.8 4,043,546 - Ga0059261_3926 0.81 -0.4 4,043,641 + Ga0059261_3926 0.84 -0.7 4,043,642 - Ga0059261_3926 0.84 -0.7 4,043,684 + Ga0059261_3926 0.85 -0.9 4,043,685 - Ga0059261_3926 0.85 -0.7 4,043,827 + Ga0059261_3926 0.89 -0.6 4,043,827 + Ga0059261_3926 0.89 -1.1 4,043,828 - Ga0059261_3926 0.89 -0.4 4,044,214 + +0.4 4,044,214 + +0.4 4,044,215 - -0.2 4,044,215 - -1.3 4,044,215 - +0.4 4,044,215 - +0.7 4,044,378 + -0.3 4,044,379 - -0.8 4,044,379 - -1.1 4,044,405 + -0.5 4,044,405 + +0.2 4,044,406 - +0.4 4,044,459 + -0.7 4,044,459 + +0.1 4,044,459 + -0.7 4,044,459 + +0.7 4,044,459 + +0.0 4,044,459 + -0.6 4,044,459 + +0.5 4,044,460 - +0.5 4,044,460 - +0.2 4,044,460 - +1.1 4,044,460 - -0.5 4,044,543 + Ga0059261_3927 0.17 -0.4 4,044,543 + Ga0059261_3927 0.17 +0.3 4,044,543 + Ga0059261_3927 0.17 +0.6 4,044,544 - Ga0059261_3927 0.17 +0.7 4,044,544 - Ga0059261_3927 0.17 +0.1 4,044,627 + Ga0059261_3927 0.24 +0.1 4,044,627 + Ga0059261_3927 0.24 +0.1 4,044,627 + Ga0059261_3927 0.24 -0.0 4,044,627 + Ga0059261_3927 0.24 -0.8 4,044,627 + Ga0059261_3927 0.24 +1.6 4,044,627 + Ga0059261_3927 0.24 -0.5 4,044,628 - Ga0059261_3927 0.24 +0.9 4,044,628 - Ga0059261_3927 0.24 +0.3 4,044,628 - Ga0059261_3927 0.24 -0.2 4,044,628 - Ga0059261_3927 0.24 -0.6 4,044,628 - Ga0059261_3927 0.24 -0.6 4,044,628 - Ga0059261_3927 0.24 -0.3 4,044,628 - Ga0059261_3927 0.24 -0.1 4,044,628 - Ga0059261_3927 0.24 -0.5 4,044,631 + Ga0059261_3927 0.24 +1.1 4,044,631 + Ga0059261_3927 0.24 -0.1 4,044,631 + Ga0059261_3927 0.24 +0.5 4,044,631 + Ga0059261_3927 0.24 -0.4 4,044,631 + Ga0059261_3927 0.24 -0.0 4,044,631 + Ga0059261_3927 0.24 -0.1 4,044,631 + Ga0059261_3927 0.24 +0.1 4,044,631 + Ga0059261_3927 0.24 +0.2 4,044,631 + Ga0059261_3927 0.24 -0.8 4,044,631 + Ga0059261_3927 0.24 +1.0 4,044,631 + Ga0059261_3927 0.24 +0.1 4,044,631 + Ga0059261_3927 0.24 -0.1 4,044,631 + Ga0059261_3927 0.24 -0.6 4,044,631 + Ga0059261_3927 0.24 -0.5 4,044,631 + Ga0059261_3927 0.24 -0.4 4,044,632 - Ga0059261_3927 0.25 +0.0 4,044,632 - Ga0059261_3927 0.25 -0.3 4,044,632 - Ga0059261_3927 0.25 +0.1 4,044,632 - Ga0059261_3927 0.25 -0.1 4,044,632 - Ga0059261_3927 0.25 +0.0 4,044,632 - Ga0059261_3927 0.25 +0.5 4,044,632 - Ga0059261_3927 0.25 +1.2 4,044,632 - Ga0059261_3927 0.25 +0.4 4,044,633 + Ga0059261_3927 0.25 -0.3 4,044,633 + Ga0059261_3927 0.25 +0.7 4,044,633 + Ga0059261_3927 0.25 -0.4 4,044,633 + Ga0059261_3927 0.25 -0.1 4,044,633 + Ga0059261_3927 0.25 -0.5 4,044,633 + Ga0059261_3927 0.25 -0.3 4,044,633 + Ga0059261_3927 0.25 +2.0 4,044,633 + Ga0059261_3927 0.25 +1.4 4,044,633 + Ga0059261_3927 0.25 +0.2 4,044,633 + Ga0059261_3927 0.25 -0.1 4,044,633 + Ga0059261_3927 0.25 +0.0 4,044,633 + Ga0059261_3927 0.25 -0.1 4,044,633 + Ga0059261_3927 0.25 +0.5 4,044,633 + Ga0059261_3927 0.25 +0.4 4,044,633 + Ga0059261_3927 0.25 +1.0 4,044,633 + Ga0059261_3927 0.25 -0.0 4,044,633 + Ga0059261_3927 0.25 +0.2 4,044,634 - Ga0059261_3927 0.25 -0.2 4,044,634 - Ga0059261_3927 0.25 +0.0 4,044,634 - Ga0059261_3927 0.25 +0.0 4,044,634 - Ga0059261_3927 0.25 -0.6 4,044,634 - Ga0059261_3927 0.25 -0.2 4,044,634 - Ga0059261_3927 0.25 +0.2 4,044,634 - Ga0059261_3927 0.25 -0.3 4,044,634 - Ga0059261_3927 0.25 -0.6 4,044,634 - Ga0059261_3927 0.25 -1.7 4,045,096 - Ga0059261_3927 0.66 -0.2 4,045,096 - Ga0059261_3927 0.66 +0.1 4,045,104 + Ga0059261_3927 0.66 +0.9 4,045,105 - Ga0059261_3927 0.67 -0.4 4,045,105 - Ga0059261_3927 0.67 +0.0 4,045,381 + -0.1 4,045,381 + -0.0 4,045,382 - -0.5 4,045,511 - -0.2 4,045,579 - +0.7 4,045,584 - -0.1 4,045,657 + Ga0059261_3928 0.15 +0.2 4,045,658 - Ga0059261_3928 0.15 -0.5 4,045,682 + Ga0059261_3928 0.21 -0.2 4,045,683 - Ga0059261_3928 0.21 +1.0 4,045,683 - Ga0059261_3928 0.21 +0.4 4,045,683 - Ga0059261_3928 0.21 +0.6 4,045,695 + Ga0059261_3928 0.24 +0.4 4,045,696 - Ga0059261_3928 0.25 -1.2 4,045,787 + Ga0059261_3928 0.47 +0.5 4,045,788 - Ga0059261_3928 0.47 -0.1 4,045,865 + Ga0059261_3928 0.66 +0.1 4,045,969 + -0.8 4,045,969 + +0.1 4,045,970 - +0.0 4,045,970 - +0.8 4,045,970 - +0.1 4,046,150 + +0.4 4,046,151 - +0.4 4,046,182 + +0.0 4,046,184 + -0.0 4,046,184 + -0.0 4,046,184 + -0.5 4,046,184 + +0.4 4,046,184 + -1.8 4,046,184 + -0.4 4,046,185 - +0.1 4,046,185 - -1.5 4,046,185 - -0.9 4,046,185 - -0.7 4,046,185 - -0.9 4,046,185 - -0.5 4,046,185 - +0.2 4,046,185 - -0.1 4,046,185 - +0.6 4,046,185 - -0.3 4,046,185 - -1.0 4,046,211 + Ga0059261_3930 0.13 +0.9 4,046,211 + Ga0059261_3930 0.13 -0.2 4,046,211 + Ga0059261_3930 0.13 +0.2 4,046,211 + Ga0059261_3930 0.13 -0.0 4,046,211 + Ga0059261_3930 0.13 -1.0 4,046,212 - Ga0059261_3930 0.13 -1.7 4,046,212 - Ga0059261_3930 0.13 -0.0 4,046,212 - Ga0059261_3930 0.13 -1.1 4,046,238 + Ga0059261_3930 0.18 +0.1 4,046,238 + Ga0059261_3930 0.18 +0.2 4,046,313 + Ga0059261_3930 0.33 +0.9 4,046,313 + Ga0059261_3930 0.33 -0.0 4,046,313 + Ga0059261_3930 0.33 -0.6 4,046,313 + +0.6 4,046,313 + Ga0059261_3930 0.33 -0.3 4,046,313 + Ga0059261_3930 0.33 +0.2 4,046,313 + Ga0059261_3930 0.33 +0.3 4,046,313 + Ga0059261_3930 0.33 -0.6 4,046,314 - Ga0059261_3930 0.33 +0.1 4,046,314 - Ga0059261_3930 0.33 -0.1 4,046,317 + Ga0059261_3930 0.34 -0.3 4,046,317 + Ga0059261_3930 0.34 -0.5 4,046,317 + Ga0059261_3930 0.34 -0.0 4,046,317 + Ga0059261_3930 0.34 -0.1 4,046,317 + Ga0059261_3930 0.34 +0.7 4,046,317 + Ga0059261_3930 0.34 -0.6 4,046,317 + Ga0059261_3930 0.34 -1.1 4,046,317 + Ga0059261_3930 0.34 -1.5 4,046,317 + Ga0059261_3930 0.34 +0.9 4,046,317 + Ga0059261_3930 0.34 -0.1 4,046,318 - Ga0059261_3930 0.34 -0.1 4,046,318 - Ga0059261_3930 0.34 +1.1 4,046,318 - Ga0059261_3930 0.34 -0.2 4,046,318 - Ga0059261_3930 0.34 -1.1 4,046,318 - Ga0059261_3930 0.34 -1.2 4,046,318 - Ga0059261_3930 0.34 -0.5 4,046,318 - Ga0059261_3930 0.34 -0.5 4,046,318 - Ga0059261_3930 0.34 -1.9 4,046,334 + Ga0059261_3930 0.37 +0.0 4,046,334 + Ga0059261_3930 0.37 +0.4 4,046,334 + Ga0059261_3930 0.37 +0.3 4,046,334 + Ga0059261_3930 0.37 +0.2 4,046,335 - Ga0059261_3930 0.38 -0.7 4,046,335 - Ga0059261_3930 0.38 +0.5 4,046,335 - Ga0059261_3930 0.38 +0.9 4,046,335 - Ga0059261_3930 0.38 +1.3 4,046,358 + Ga0059261_3930 0.42 -0.6 4,046,358 + Ga0059261_3930 0.42 -0.0 4,046,358 + Ga0059261_3930 0.42 +0.3 4,046,358 + Ga0059261_3930 0.42 +0.6 4,046,358 + Ga0059261_3930 0.42 +0.1 4,046,358 + Ga0059261_3930 0.42 +0.0 4,046,359 - Ga0059261_3930 0.42 +0.4 4,046,411 - Ga0059261_3930 0.53 +0.1 4,046,467 + Ga0059261_3930 0.64 -0.1 4,046,468 - Ga0059261_3930 0.64 +0.0
Or see this region's nucleotide sequence