Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03754

Experiment: PYE with Carbenicillin 0.1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_03753 and CCNA_03754 overlap by 20 nucleotidesCCNA_03754 and CCNA_03755 are separated by 119 nucleotides CCNA_03753: CCNA_03753 - iron-sulfur cluster-binding protein, at 3,922,579 to 3,923,709 _03753 CCNA_03754: CCNA_03754 - FtsZ-binding protein FzlA, at 3,923,690 to 3,924,376 _03754 CCNA_03755: CCNA_03755 - bifunctional D-glycero-D-manno-heptose-7-phosphate 1-kinase/D-glycero-D-manno-heptose-1-phosphate adenylyltransferase, at 3,924,496 to 3,925,947 _03755 Position (kb) 3923 3924 3925Strain fitness (log2 ratio) -3 -2 -1 0 1at 3922.710 kb on - strand, within CCNA_03753at 3922.723 kb on + strand, within CCNA_03753at 3922.723 kb on + strand, within CCNA_03753at 3922.731 kb on - strand, within CCNA_03753at 3922.739 kb on + strand, within CCNA_03753at 3922.807 kb on - strand, within CCNA_03753at 3922.870 kb on + strand, within CCNA_03753at 3922.892 kb on + strand, within CCNA_03753at 3922.901 kb on - strand, within CCNA_03753at 3922.948 kb on - strand, within CCNA_03753at 3922.958 kb on + strand, within CCNA_03753at 3922.966 kb on - strand, within CCNA_03753at 3922.972 kb on + strand, within CCNA_03753at 3923.033 kb on + strand, within CCNA_03753at 3923.033 kb on + strand, within CCNA_03753at 3923.041 kb on - strand, within CCNA_03753at 3923.071 kb on + strand, within CCNA_03753at 3923.090 kb on - strand, within CCNA_03753at 3923.145 kb on + strand, within CCNA_03753at 3923.145 kb on + strand, within CCNA_03753at 3923.146 kb on + strand, within CCNA_03753at 3923.153 kb on - strand, within CCNA_03753at 3923.153 kb on - strand, within CCNA_03753at 3923.153 kb on - strand, within CCNA_03753at 3923.153 kb on - strand, within CCNA_03753at 3923.153 kb on - strand, within CCNA_03753at 3923.153 kb on - strand, within CCNA_03753at 3923.163 kb on - strand, within CCNA_03753at 3923.163 kb on - strand, within CCNA_03753at 3923.199 kb on + strand, within CCNA_03753at 3923.227 kb on + strand, within CCNA_03753at 3923.235 kb on - strand, within CCNA_03753at 3923.235 kb on - strand, within CCNA_03753at 3923.240 kb on - strand, within CCNA_03753at 3923.279 kb on + strand, within CCNA_03753at 3923.298 kb on + strand, within CCNA_03753at 3923.306 kb on - strand, within CCNA_03753at 3923.323 kb on + strand, within CCNA_03753at 3923.332 kb on - strand, within CCNA_03753at 3923.378 kb on - strand, within CCNA_03753at 3923.443 kb on - strand, within CCNA_03753at 3923.473 kb on - strand, within CCNA_03753at 3923.486 kb on + strand, within CCNA_03753at 3923.517 kb on + strand, within CCNA_03753at 3923.517 kb on + strand, within CCNA_03753at 3923.520 kb on - strand, within CCNA_03753at 3923.525 kb on - strand, within CCNA_03753at 3923.525 kb on - strand, within CCNA_03753at 3923.525 kb on - strand, within CCNA_03753at 3923.525 kb on - strand, within CCNA_03753at 3923.525 kb on - strand, within CCNA_03753at 3923.530 kb on - strand, within CCNA_03753at 3923.535 kb on - strand, within CCNA_03753at 3923.557 kb on - strand, within CCNA_03753at 3923.584 kb on - strand, within CCNA_03753at 3923.590 kb on - strand, within CCNA_03753at 3923.597 kb on - strandat 3923.602 kb on + strandat 3923.622 kb on - strandat 3923.681 kb on + strandat 3924.400 kb on - strandat 3924.530 kb on + strandat 3924.532 kb on - strandat 3924.532 kb on - strandat 3924.532 kb on - strandat 3924.532 kb on - strandat 3924.537 kb on - strandat 3924.608 kb on + strandat 3924.676 kb on - strand, within CCNA_03755at 3924.741 kb on - strand, within CCNA_03755at 3924.765 kb on - strand, within CCNA_03755at 3924.832 kb on - strand, within CCNA_03755at 3924.832 kb on - strand, within CCNA_03755at 3924.875 kb on - strand, within CCNA_03755at 3924.902 kb on - strand, within CCNA_03755at 3925.203 kb on - strand, within CCNA_03755at 3925.210 kb on + strand, within CCNA_03755at 3925.359 kb on + strand, within CCNA_03755at 3925.362 kb on - strand, within CCNA_03755at 3925.375 kb on - strand, within CCNA_03755

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Carbenicillin 0.1 mg/ml
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3,922,710 - CCNA_03753 0.12 -1.6
3,922,723 + CCNA_03753 0.13 -1.2
3,922,723 + CCNA_03753 0.13 -2.1
3,922,731 - CCNA_03753 0.13 +0.7
3,922,739 + CCNA_03753 0.14 +0.5
3,922,807 - CCNA_03753 0.20 +0.9
3,922,870 + CCNA_03753 0.26 -0.2
3,922,892 + CCNA_03753 0.28 +0.2
3,922,901 - CCNA_03753 0.28 -0.4
3,922,948 - CCNA_03753 0.33 -1.0
3,922,958 + CCNA_03753 0.34 +0.5
3,922,966 - CCNA_03753 0.34 -1.8
3,922,972 + CCNA_03753 0.35 -0.8
3,923,033 + CCNA_03753 0.40 +0.2
3,923,033 + CCNA_03753 0.40 -0.6
3,923,041 - CCNA_03753 0.41 +0.2
3,923,071 + CCNA_03753 0.44 -0.7
3,923,090 - CCNA_03753 0.45 -0.5
3,923,145 + CCNA_03753 0.50 -1.0
3,923,145 + CCNA_03753 0.50 -3.2
3,923,146 + CCNA_03753 0.50 -1.3
3,923,153 - CCNA_03753 0.51 -0.7
3,923,153 - CCNA_03753 0.51 +0.4
3,923,153 - CCNA_03753 0.51 -0.6
3,923,153 - CCNA_03753 0.51 +0.2
3,923,153 - CCNA_03753 0.51 +0.1
3,923,153 - CCNA_03753 0.51 -1.2
3,923,163 - CCNA_03753 0.52 +0.4
3,923,163 - CCNA_03753 0.52 -0.8
3,923,199 + CCNA_03753 0.55 -2.5
3,923,227 + CCNA_03753 0.57 -1.1
3,923,235 - CCNA_03753 0.58 -1.7
3,923,235 - CCNA_03753 0.58 -1.0
3,923,240 - CCNA_03753 0.58 -0.8
3,923,279 + CCNA_03753 0.62 -0.8
3,923,298 + CCNA_03753 0.64 -0.7
3,923,306 - CCNA_03753 0.64 -1.0
3,923,323 + CCNA_03753 0.66 -0.8
3,923,332 - CCNA_03753 0.67 -1.0
3,923,378 - CCNA_03753 0.71 -1.6
3,923,443 - CCNA_03753 0.76 -1.2
3,923,473 - CCNA_03753 0.79 -1.5
3,923,486 + CCNA_03753 0.80 -0.3
3,923,517 + CCNA_03753 0.83 +0.1
3,923,517 + CCNA_03753 0.83 -3.2
3,923,520 - CCNA_03753 0.83 +0.4
3,923,525 - CCNA_03753 0.84 +0.4
3,923,525 - CCNA_03753 0.84 -0.3
3,923,525 - CCNA_03753 0.84 -0.7
3,923,525 - CCNA_03753 0.84 -1.2
3,923,525 - CCNA_03753 0.84 -0.0
3,923,530 - CCNA_03753 0.84 +0.7
3,923,535 - CCNA_03753 0.85 +0.3
3,923,557 - CCNA_03753 0.86 -0.7
3,923,584 - CCNA_03753 0.89 +0.6
3,923,590 - CCNA_03753 0.89 -1.0
3,923,597 - +0.2
3,923,602 + -1.2
3,923,622 - +0.0
3,923,681 + -0.4
3,924,400 - +0.3
3,924,530 + -1.1
3,924,532 - -0.5
3,924,532 - +0.3
3,924,532 - +0.9
3,924,532 - +0.7
3,924,537 - -1.6
3,924,608 + -1.7
3,924,676 - CCNA_03755 0.12 -0.7
3,924,741 - CCNA_03755 0.17 -0.4
3,924,765 - CCNA_03755 0.19 -2.7
3,924,832 - CCNA_03755 0.23 -1.5
3,924,832 - CCNA_03755 0.23 -0.0
3,924,875 - CCNA_03755 0.26 -1.4
3,924,902 - CCNA_03755 0.28 -0.7
3,925,203 - CCNA_03755 0.49 -1.8
3,925,210 + CCNA_03755 0.49 +0.2
3,925,359 + CCNA_03755 0.59 -1.0
3,925,362 - CCNA_03755 0.60 -1.0
3,925,375 - CCNA_03755 0.61 -0.4

Or see this region's nucleotide sequence