Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02392

Experiment: PYE with Carbenicillin 0.1 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Carbenicillin 0.1 mg/ml
2,535,161	+				+2.1
2,535,161	+				+1.1
2,535,183	+				+0.1
2,535,201	-				-1.3
2,535,214	+				-0.4
2,535,214	+				+0.1
2,535,216	+				+0.8
2,535,222	-				-0.6
2,535,222	-				-1.3
2,535,307	+				+0.9
2,535,323	+				-0.1
2,535,325	+				+1.2
2,535,356	+				+1.2
2,535,361	+				+1.3
2,535,374	-				+2.2
2,535,379	-				+0.9
2,535,409	-		CCNA_02391	0.10	+1.1
2,535,445	+		CCNA_02391	0.15	-1.2
2,535,445	+		CCNA_02391	0.15	-1.8
2,535,453	-		CCNA_02391	0.16	+0.1
2,535,453	-		CCNA_02391	0.16	-0.5
2,535,453	-				+4.2
2,535,467	-		CCNA_02391	0.18	-1.8
2,535,469	+		CCNA_02391	0.18	-0.5
2,535,505	-		CCNA_02391	0.23	-0.1
2,535,568	+		CCNA_02391	0.31	-1.8
2,535,570	+		CCNA_02391	0.31	-1.8
2,535,576	-		CCNA_02391	0.32	+0.5
2,535,577	-		CCNA_02391	0.32	-1.5
2,535,619	+		CCNA_02391	0.37	+1.3
2,535,623	-		CCNA_02391	0.38	-1.1
2,535,628	-		CCNA_02391	0.38	-1.9
2,535,637	+		CCNA_02391	0.39	+0.2
2,535,637	+		CCNA_02391	0.39	-0.2
2,535,637	+		CCNA_02391	0.39	-2.1
2,535,637	+		CCNA_02391	0.39	-2.2
2,535,645	-		CCNA_02391	0.41	+0.1
2,535,648	-		CCNA_02391	0.41	+1.1
2,535,694	+		CCNA_02391	0.47	+0.6
2,535,708	+		CCNA_02391	0.49	-1.7
2,535,708	+		CCNA_02391	0.49	-1.0
2,535,713	+		CCNA_02391	0.49	-1.8
2,535,713	+		CCNA_02391	0.49	-0.5
2,535,716	-		CCNA_02391	0.50	+0.1
2,535,718	+		CCNA_02391	0.50	-0.8
2,535,721	-		CCNA_02391	0.50	+1.0
2,535,721	-		CCNA_02391	0.50	-2.0
2,535,749	-		CCNA_02391	0.54	+0.5
2,535,793	+		CCNA_02391	0.59	-1.9
2,535,831	+		CCNA_02391	0.64	+0.9
2,535,893	+		CCNA_02391	0.72	-1.3
2,535,901	-		CCNA_02391	0.73	+0.0
2,535,923	-		CCNA_02391	0.76	-0.9
2,535,932	-		CCNA_02391	0.77	-0.3
2,536,003	+		CCNA_02391	0.86	-0.3
2,536,004	-		CCNA_02391	0.87	-0.8
2,536,018	+		CCNA_02391	0.88	+1.2
2,536,028	+		CCNA_02391	0.90	-1.7
2,536,028	+		CCNA_02391	0.90	+1.2
2,536,028	+		CCNA_02391	0.90	-1.7
2,536,036	-				-1.1
2,536,036	-				-0.2
2,536,036	-				+0.4
2,536,036	-				-1.7
2,536,058	-				-0.9
2,536,073	+				-0.5
2,536,090	+				+0.7
2,536,098	-				+2.1
2,536,153	-				-1.4
2,536,188	-		CCNA_02392	0.18	-1.3
2,536,239	+		CCNA_02392	0.31	-1.2
2,536,252	-		CCNA_02392	0.35	+0.5
2,536,271	-		CCNA_02392	0.40	-0.0
2,536,284	-		CCNA_02392	0.43	+1.0
2,536,284	-		CCNA_02392	0.43	+0.4
2,536,286	+		CCNA_02392	0.43	+0.8
2,536,311	+		CCNA_02392	0.50	+0.1
2,536,336	+		CCNA_02392	0.56	-1.9
2,536,355	-		CCNA_02392	0.61	-0.2
2,536,371	-		CCNA_02392	0.65	-1.2
2,536,398	-		CCNA_02392	0.72	-0.9
2,536,408	-		CCNA_02392	0.75	-0.4
2,536,415	-		CCNA_02392	0.77	-1.7
2,536,461	-		CCNA_02392	0.89	-2.4
2,536,468	+				+2.6
2,536,476	-				-0.8
2,536,476	-				-0.6
2,536,526	-				-1.0
2,536,526	-				+2.1
2,536,569	-				-1.8
2,536,595	-		CCNA_03898	0.14	-0.3
2,536,611	+		CCNA_03898	0.18	-0.0
2,536,630	+		CCNA_03898	0.22	-1.2
2,536,630	+		CCNA_03898	0.22	-1.6
2,536,633	-		CCNA_03898	0.23	-1.2
2,536,635	+				+2.7
2,536,638	-		CCNA_03898	0.24	-2.1
2,536,663	+		CCNA_03898	0.30	-0.6
2,536,806	+		CCNA_03898	0.63	-0.6
2,536,811	+				+0.6
2,536,811	+		CCNA_03898	0.64	-0.3
2,536,811	+		CCNA_03898	0.64	-1.4
2,536,811	+		CCNA_03898	0.64	+0.8
2,536,811	+		CCNA_03898	0.64	+0.0
2,536,811	+		CCNA_03898	0.64	+1.6
2,536,811	+		CCNA_03898	0.64	-1.0
2,536,811	+		CCNA_03898	0.64	-2.2
2,536,811	+		CCNA_03898	0.64	-0.5
2,536,811	+		CCNA_03898	0.64	-1.4
2,536,812	-		CCNA_03898	0.64	+0.6
2,536,812	-		CCNA_03898	0.64	+1.0
2,536,816	+		CCNA_03898	0.65	-1.9
2,536,819	-		CCNA_03898	0.66	+2.4
2,536,819	-		CCNA_03898	0.66	+0.7
2,536,819	-		CCNA_03898	0.66	-0.2
2,536,819	-		CCNA_03898	0.66	-0.4
2,536,819	-		CCNA_03898	0.66	+0.0
2,536,824	-		CCNA_03898	0.67	+0.9
2,536,829	-		CCNA_03898	0.68	-1.1
2,536,835	-		CCNA_03898	0.69	-0.6
2,536,862	+		CCNA_03898	0.75	-0.8
2,536,872	+		CCNA_03898	0.78	-0.4
2,536,880	-		CCNA_03898	0.79	+0.6
2,536,880	-		CCNA_03898	0.79	-0.9
2,536,880	-		CCNA_03898	0.79	-2.2
2,536,927	+				-0.0
2,536,927	+				-0.9
2,536,935	-				-0.6
2,536,963	+				-0.0
2,536,963	+				-0.5
2,536,968	+				-1.4
2,536,971	-				+0.6
2,536,971	-				+0.3
2,536,971	-				-1.0
2,537,033	+				+0.4
2,537,036	-				-0.9
2,537,038	+				-1.4
2,537,046	-		CCNA_03881	0.11	-0.4
2,537,076	+		CCNA_03881	0.20	+1.3
2,537,123	+		CCNA_03881	0.33	+0.7
2,537,123	+		CCNA_03881	0.33	+0.2
2,537,125	+		CCNA_03881	0.34	-1.1
2,537,133	-		CCNA_03881	0.36	-0.5
2,537,158	-		CCNA_03881	0.44	+1.0
2,537,158	-		CCNA_03881	0.44	-1.1
2,537,166	+		CCNA_03881	0.46	-0.7
2,537,226	+		CCNA_03881	0.63	-0.4
2,537,226	+		CCNA_03881	0.63	-2.0
2,537,234	-		CCNA_03881	0.66	-1.0
2,537,272	-		CCNA_03881	0.77	+0.7
2,537,306	-		CCNA_03881	0.87	+1.2
2,537,322	+				+0.1
2,537,345	+				-0.7
2,537,345	+				-0.8
2,537,345	+				-1.5
2,537,345	+				-0.7
2,537,345	+				+3.1
2,537,345	+				-0.9
2,537,345	+				-1.0
2,537,345	+				-0.0
2,537,345	+				+0.7
2,537,353	-				-1.0
2,537,353	-				+1.1
2,537,353	-				-0.4
2,537,353	-				-0.4
2,537,353	-				-0.2
2,537,353	-				-0.7
2,537,353	-				-1.1
2,537,353	-				-0.3
2,537,353	-				-0.7
2,537,353	-				+1.7
2,537,353	-				+0.9
2,537,353	-				+0.1
2,537,353	-				-1.8
2,537,353	-				-0.0
2,537,353	-				-0.4
2,537,353	-				-0.3
2,537,353	-				-0.7
2,537,353	-				-1.1
2,537,353	-				+0.7
2,537,353	-				+0.5
2,537,353	-				-1.4
2,537,353	-				-0.9
2,537,353	-				-0.2
2,537,375	-				-0.4
2,537,375	-				-0.6
2,537,387	+				+0.1
2,537,388	-				+0.9
2,537,395	+				-0.7
2,537,395	-				+0.2
2,537,403	-				-1.5
2,537,403	-				-1.8
2,537,420	-				-0.5
2,537,442	-				+0.9
2,537,451	+				-1.0
2,537,479	-		CCNA_02394	0.13	+0.2
2,537,491	+		CCNA_02394	0.15	+0.0
2,537,502	+		CCNA_02394	0.17	-1.7