Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01743

Experiment: PYE with Carbenicillin 0.1 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Carbenicillin 0.1 mg/ml
1,870,778	+				+0.9
1,870,778	+				+2.6
1,870,786	-				-0.2
1,870,786	-				-1.2
1,870,818	+				+1.4
1,870,826	-				-0.9
1,870,870	+				+1.8
1,870,870	+				+1.5
1,870,946	+		CCNA_01742	0.21	+2.0
1,870,946	+		CCNA_01742	0.21	+1.7
1,870,954	-		CCNA_01742	0.22	-1.5
1,870,954	-		CCNA_01742	0.22	+0.2
1,871,046	-		CCNA_01742	0.36	-0.2
1,871,050	+		CCNA_01742	0.37	+1.5
1,871,064	+		CCNA_01742	0.39	+1.8
1,871,079	+		CCNA_01742	0.41	+1.2
1,871,087	-		CCNA_01742	0.42	+0.5
1,871,087	-		CCNA_01742	0.42	-1.7
1,871,141	-		CCNA_01742	0.50	+0.5
1,871,194	+		CCNA_01742	0.58	+2.1
1,871,261	+		CCNA_01742	0.69	+1.7
1,871,298	+		CCNA_01742	0.74	+1.8
1,871,339	+		CCNA_01742	0.80	+1.3
1,871,347	-		CCNA_01742	0.82	-0.6
1,871,370	+		CCNA_01742	0.85	+1.1
1,871,440	+				+0.5
1,871,474	+				+1.4
1,871,476	+				+0.0
1,871,484	-				-1.5
1,871,518	+				-0.6
1,871,538	+		CCNA_01743	0.12	-1.4
1,871,557	+		CCNA_01743	0.14	+1.5
1,871,582	-		CCNA_01743	0.17	-0.3
1,871,607	+		CCNA_01743	0.20	+0.6
1,871,666	+		CCNA_01743	0.28	-0.8
1,871,677	+		CCNA_01743	0.29	-2.7
1,871,709	-		CCNA_01743	0.33	-1.8
1,871,709	-		CCNA_01743	0.33	-1.0
1,871,713	-		CCNA_01743	0.33	-1.0
1,871,719	-		CCNA_01743	0.34	-0.7
1,871,745	+				+2.0
1,871,748	-		CCNA_01743	0.38	+0.2
1,871,753	-		CCNA_01743	0.38	-0.2
1,871,805	+		CCNA_01743	0.45	-2.9
1,871,806	-		CCNA_01743	0.45	-1.0
1,871,813	-		CCNA_01743	0.46	+1.3
1,871,852	+		CCNA_01743	0.51	-1.2
1,871,860	+		CCNA_01743	0.52	-0.4
1,871,860	+		CCNA_01743	0.52	+0.0
1,871,860	+		CCNA_01743	0.52	+0.0
1,871,860	+		CCNA_01743	0.52	+3.1
1,871,877	+		CCNA_01743	0.54	+0.3
1,871,885	-		CCNA_01743	0.55	-0.7
1,871,885	-		CCNA_01743	0.55	-0.7
1,871,933	+		CCNA_01743	0.61	-1.0
1,871,941	-		CCNA_01743	0.62	-1.0
1,871,941	-		CCNA_01743	0.62	+0.3
1,871,942	-		CCNA_01743	0.62	-1.1
1,871,944	+		CCNA_01743	0.62	+0.3
1,871,944	+		CCNA_01743	0.62	-0.8
1,871,952	-		CCNA_01743	0.63	-2.1
1,871,954	+		CCNA_01743	0.63	+1.3
1,871,957	-		CCNA_01743	0.64	+0.5
1,871,962	+		CCNA_01743	0.64	-0.4
1,871,962	+		CCNA_01743	0.64	-1.2
1,872,001	+		CCNA_01743	0.69	+0.3
1,872,009	-		CCNA_01743	0.70	+0.0
1,872,009	-		CCNA_01743	0.70	+0.1
1,872,009	-		CCNA_01743	0.70	-0.2
1,872,009	-		CCNA_01743	0.70	+0.2
1,872,011	+		CCNA_01743	0.70	-2.0
1,872,016	+		CCNA_01743	0.71	-2.3
1,872,016	+		CCNA_01743	0.71	-0.5
1,872,018	+		CCNA_01743	0.71	-0.5
1,872,019	-		CCNA_01743	0.71	-0.6
1,872,019	-		CCNA_01743	0.71	+0.1
1,872,019	-		CCNA_01743	0.71	+0.5
1,872,026	+		CCNA_01743	0.72	-2.1
1,872,042	-		CCNA_01743	0.74	+0.0
1,872,050	-		CCNA_01743	0.75	-0.3
1,872,050	-		CCNA_01743	0.75	-1.4
1,872,057	+		CCNA_01743	0.76	-0.7
1,872,057	+		CCNA_01743	0.76	-0.2
1,872,095	-		CCNA_01743	0.81	-2.1
1,872,124	+		CCNA_01743	0.84	-0.2
1,872,124	+		CCNA_01743	0.84	-0.0
1,872,152	+		CCNA_01743	0.88	-1.5
1,872,174	+				-1.0
1,872,181	+				-0.2
1,872,251	-				-0.1
1,872,266	-				+1.8
1,872,268	+				-0.1
1,872,269	+				-0.0
1,872,296	-				-0.9
1,872,323	+				+0.9
1,872,328	+				-2.0
1,872,362	+				+2.3
1,872,370	-				-1.3
1,872,459	-		CCNA_01744	0.12	-2.4
1,872,475	+		CCNA_01744	0.13	+0.8
1,872,483	-		CCNA_01744	0.14	+0.1
1,872,488	-		CCNA_01744	0.15	+0.3
1,872,488	-		CCNA_01744	0.15	-1.7
1,872,488	-		CCNA_01744	0.15	-0.7
1,872,495	-		CCNA_01744	0.15	-1.7
1,872,516	+		CCNA_01744	0.17	-0.4
1,872,524	-		CCNA_01744	0.18	-0.7
1,872,529	-		CCNA_01744	0.18	-1.0
1,872,544	-		CCNA_01744	0.20	-3.4
1,872,588	+		CCNA_01744	0.24	-1.0
1,872,607	-		CCNA_01744	0.25	+0.3
1,872,614	+		CCNA_01744	0.26	-0.6
1,872,622	+		CCNA_01744	0.27	-2.0
1,872,622	+		CCNA_01744	0.27	-2.6
1,872,624	+		CCNA_01744	0.27	-0.9
1,872,630	-		CCNA_01744	0.27	-0.0
1,872,632	-		CCNA_01744	0.28	-0.8
1,872,645	-		CCNA_01744	0.29	-0.9
1,872,684	-		CCNA_01744	0.32	-2.2
1,872,715	+		CCNA_01744	0.35	-2.1
1,872,747	-		CCNA_01744	0.38	-2.2
1,872,752	-		CCNA_01744	0.38	-1.7
1,872,796	+		CCNA_01744	0.42	-0.9
1,872,804	-		CCNA_01744	0.43	-1.9
1,872,805	-		CCNA_01744	0.43	-0.6
1,872,805	-		CCNA_01744	0.43	-0.5
1,872,805	-		CCNA_01744	0.43	+0.5
1,872,823	+		CCNA_01744	0.45	-0.6
1,872,829	+		CCNA_01744	0.45	+0.0
1,872,829	+		CCNA_01744	0.45	-1.8
1,872,865	-		CCNA_01744	0.49	+1.1
1,872,886	-		CCNA_01744	0.50	-0.3
1,872,895	+		CCNA_01744	0.51	-2.3
1,872,903	-		CCNA_01744	0.52	-0.2
1,872,903	-		CCNA_01744	0.52	-0.0
1,872,903	-		CCNA_01744	0.52	-1.2
1,872,913	+		CCNA_01744	0.53	-0.7
1,872,934	+		CCNA_01744	0.55	-0.4
1,872,934	+		CCNA_01744	0.55	+0.5
1,872,942	-		CCNA_01744	0.55	+0.0
1,872,942	-		CCNA_01744	0.55	-0.4
1,872,942	-		CCNA_01744	0.55	-2.6
1,873,021	+		CCNA_01744	0.63	-1.3
1,873,026	+		CCNA_01744	0.63	+0.0
1,873,026	+		CCNA_01744	0.63	-1.5
1,873,034	-		CCNA_01744	0.64	+1.2
1,873,034	-		CCNA_01744	0.64	-0.8
1,873,070	-		CCNA_01744	0.67	+0.8
1,873,081	-		CCNA_01744	0.68	-0.5
1,873,088	+		CCNA_01744	0.69	-1.4
1,873,088	+		CCNA_01744	0.69	-0.6
1,873,096	-		CCNA_01744	0.69	-1.2
1,873,116	+		CCNA_01744	0.71	+0.3
1,873,127	+		CCNA_01744	0.72	+0.5
1,873,135	+		CCNA_01744	0.73	-0.7
1,873,143	-		CCNA_01744	0.73	+0.1
1,873,175	+		CCNA_01744	0.76	+1.5
1,873,193	-		CCNA_01744	0.78	+1.3
1,873,193	-		CCNA_01744	0.78	+0.3
1,873,198	-		CCNA_01744	0.78	+0.1
1,873,198	-		CCNA_01744	0.78	+1.5
1,873,199	+		CCNA_01744	0.79	-0.7
1,873,204	+		CCNA_01744	0.79	+0.2
1,873,237	+		CCNA_01744	0.82	-0.0
1,873,237	+		CCNA_01744	0.82	+0.3
1,873,237	+		CCNA_01744	0.82	-0.9
1,873,240	-		CCNA_01744	0.82	+0.8
1,873,245	-		CCNA_01744	0.83	-0.3
1,873,245	-		CCNA_01744	0.83	-1.0
1,873,245	-		CCNA_01744	0.83	+0.5