Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01031

Experiment: PYE with Carbenicillin 0.1 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Carbenicillin 0.1 mg/ml
1,118,705	-				-0.5
1,118,736	+				-1.8
1,118,744	-				+0.2
1,118,744	-				+0.0
1,118,744	-				-0.2
1,118,757	-				+0.3
1,118,784	+				-1.4
1,118,817	+				-2.5
1,118,842	-				-0.4
1,118,869	-				-0.5
1,118,876	-				+0.3
1,118,883	+				+0.7
1,118,890	-				+1.7
1,118,906	+				-1.9
1,118,995	+		CCNA_01030	0.18	-0.7
1,118,995	+		CCNA_01030	0.18	-1.5
1,118,995	+		CCNA_01030	0.18	+0.1
1,118,995	+		CCNA_01030	0.18	+0.1
1,118,995	+		CCNA_01030	0.18	-1.6
1,119,003	-		CCNA_01030	0.19	+1.0
1,119,003	-		CCNA_01030	0.19	+0.7
1,119,003	-		CCNA_01030	0.19	+1.9
1,119,003	-		CCNA_01030	0.19	-0.4
1,119,003	-		CCNA_01030	0.19	-0.0
1,119,016	+		CCNA_01030	0.21	-1.5
1,119,026	+		CCNA_01030	0.23	-1.1
1,119,026	+				+4.9
1,119,026	+		CCNA_01030	0.23	-1.4
1,119,026	+		CCNA_01030	0.23	-1.3
1,119,026	+		CCNA_01030	0.23	-1.1
1,119,031	+		CCNA_01030	0.24	+1.7
1,119,031	+		CCNA_01030	0.24	-1.1
1,119,031	+		CCNA_01030	0.24	-1.6
1,119,031	+		CCNA_01030	0.24	+1.6
1,119,031	+		CCNA_01030	0.24	-1.1
1,119,031	+		CCNA_01030	0.24	-1.6
1,119,031	+		CCNA_01030	0.24	+0.6
1,119,031	+		CCNA_01030	0.24	-0.5
1,119,031	+		CCNA_01030	0.24	-0.8
1,119,031	+		CCNA_01030	0.24	-1.6
1,119,034	-		CCNA_01030	0.24	-0.4
1,119,034	-		CCNA_01030	0.24	-0.2
1,119,034	-		CCNA_01030	0.24	-0.2
1,119,039	-		CCNA_01030	0.25	+0.6
1,119,039	-		CCNA_01030	0.25	-0.3
1,119,039	-		CCNA_01030	0.25	-0.5
1,119,039	-		CCNA_01030	0.25	+0.6
1,119,039	-		CCNA_01030	0.25	+0.7
1,119,039	-		CCNA_01030	0.25	-0.1
1,119,039	-		CCNA_01030	0.25	-0.4
1,119,039	-		CCNA_01030	0.25	-1.0
1,119,039	-		CCNA_01030	0.25	+0.5
1,119,039	-		CCNA_01030	0.25	+0.2
1,119,039	-		CCNA_01030	0.25	+0.7
1,119,039	-		CCNA_01030	0.25	+0.0
1,119,039	-		CCNA_01030	0.25	+0.8
1,119,039	-		CCNA_01030	0.25	+2.0
1,119,039	-		CCNA_01030	0.25	-0.5
1,119,039	-		CCNA_01030	0.25	+0.0
1,119,039	-		CCNA_01030	0.25	-0.4
1,119,051	+		CCNA_01030	0.27	+0.9
1,119,068	+		CCNA_01030	0.30	-2.0
1,119,068	+		CCNA_01030	0.30	-0.6
1,119,075	+		CCNA_01030	0.31	-0.2
1,119,076	-		CCNA_01030	0.31	+0.3
1,119,081	-		CCNA_01030	0.32	-0.3
1,119,107	-		CCNA_01030	0.36	+0.1
1,119,123	-		CCNA_01030	0.39	-2.0
1,119,140	-		CCNA_01030	0.41	-0.1
1,119,149	+		CCNA_01030	0.43	-2.0
1,119,161	+		CCNA_01030	0.45	-0.7
1,119,164	-		CCNA_01030	0.45	-0.6
1,119,214	+		CCNA_01030	0.53	-0.4
1,119,214	+		CCNA_01030	0.53	-0.4
1,119,215	+		CCNA_01030	0.54	+0.1
1,119,215	+		CCNA_01030	0.54	-1.4
1,119,215	+		CCNA_01030	0.54	-0.6
1,119,223	-		CCNA_01030	0.55	-1.0
1,119,223	-		CCNA_01030	0.55	+1.7
1,119,223	-		CCNA_01030	0.55	-2.2
1,119,229	-		CCNA_01030	0.56	-1.9
1,119,234	-		CCNA_01030	0.57	-0.3
1,119,241	-		CCNA_01030	0.58	+0.3
1,119,254	+		CCNA_01030	0.60	-0.6
1,119,254	+		CCNA_01030	0.60	-2.4
1,119,254	+		CCNA_01030	0.60	-1.4
1,119,254	+		CCNA_01030	0.60	-2.4
1,119,262	-		CCNA_01030	0.61	+1.5
1,119,262	-		CCNA_01030	0.61	+0.1
1,119,262	-		CCNA_01030	0.61	-1.4
1,119,272	+		CCNA_01030	0.63	+0.6
1,119,295	-		CCNA_01030	0.67	+0.3
1,119,349	-		CCNA_01030	0.75	+0.4
1,119,352	-		CCNA_01030	0.76	-0.6
1,119,352	-		CCNA_01030	0.76	-1.2
1,119,417	+		CCNA_01030	0.86	-0.4
1,119,442	-				-0.2
1,119,452	-				-1.0
1,119,495	-				-1.5
1,119,626	-				-0.3
1,119,633	+				+0.1
1,119,633	+				-1.1
1,119,641	-				-1.3
1,119,656	-				-1.0
1,119,665	+				-2.1
1,119,678	+				-1.5
1,119,686	-				-1.5
1,119,689	+				-1.6
1,119,697	+				-1.9
1,119,704	-				-1.1
1,119,704	-				-2.7
1,119,705	-				-1.3
1,119,705	-				-2.0
1,119,706	+				-0.6
1,119,721	-				-2.0
1,119,721	-				+1.0
1,119,735	-				+1.3
1,119,776	+				-0.5
1,119,784	-				-0.3
1,119,784	-				-1.5
1,119,784	-				-0.6
1,119,792	+				-0.6
1,119,825	+				-2.2
1,119,870	+		CCNA_01031	0.10	-0.9
1,119,870	+		CCNA_01031	0.10	-1.4
1,119,872	-		CCNA_01031	0.10	+1.0
1,119,872	-		CCNA_01031	0.10	+0.9
1,119,877	-		CCNA_01031	0.11	-1.6
1,119,886	-		CCNA_01031	0.11	-0.9
1,119,995	+		CCNA_01031	0.18	+0.7
1,120,014	+		CCNA_01031	0.19	+0.3
1,120,031	+		CCNA_01031	0.20	+2.6
1,120,034	-		CCNA_01031	0.20	+1.2
1,120,039	-		CCNA_01031	0.20	-2.4
1,120,044	-		CCNA_01031	0.21	-1.6
1,120,059	+		CCNA_01031	0.22	-0.8
1,120,064	+		CCNA_01031	0.22	-1.1
1,120,064	+		CCNA_01031	0.22	-1.1
1,120,079	+		CCNA_01031	0.23	-1.4
1,120,079	+		CCNA_01031	0.23	-2.5
1,120,079	+		CCNA_01031	0.23	-1.3
1,120,086	+		CCNA_01031	0.23	-0.1
1,120,087	-		CCNA_01031	0.23	-1.1
1,120,094	-		CCNA_01031	0.24	-2.6
1,120,094	-		CCNA_01031	0.24	-1.4
1,120,158	+		CCNA_01031	0.28	-3.1
1,120,209	-		CCNA_01031	0.31	-0.1
1,120,215	+		CCNA_01031	0.31	-2.8
1,120,223	-		CCNA_01031	0.32	-1.6
1,120,243	+		CCNA_01031	0.33	-0.9
1,120,253	-		CCNA_01031	0.33	+0.6
1,120,255	+		CCNA_01031	0.34	-1.0
1,120,269	-		CCNA_01031	0.34	+0.9
1,120,272	+		CCNA_01031	0.35	-0.8
1,120,277	+		CCNA_01031	0.35	-0.7
1,120,280	-		CCNA_01031	0.35	-1.5
1,120,288	+		CCNA_01031	0.36	-0.6
1,120,293	+		CCNA_01031	0.36	-3.0
1,120,303	+		CCNA_01031	0.36	+0.2
1,120,316	+		CCNA_01031	0.37	-2.2
1,120,326	+		CCNA_01031	0.38	-0.8
1,120,326	+		CCNA_01031	0.38	-1.7
1,120,334	-		CCNA_01031	0.38	-1.9
1,120,334	-		CCNA_01031	0.38	-1.2
1,120,334	-		CCNA_01031	0.38	-0.2
1,120,372	+		CCNA_01031	0.41	-1.8
1,120,380	-		CCNA_01031	0.41	-0.6
1,120,380	-		CCNA_01031	0.41	+1.5
1,120,423	+		CCNA_01031	0.44	-0.8
1,120,431	-		CCNA_01031	0.44	-1.1
1,120,452	+		CCNA_01031	0.45	+0.1
1,120,458	+		CCNA_01031	0.46	-2.7
1,120,459	-		CCNA_01031	0.46	-0.7
1,120,475	+		CCNA_01031	0.47	-0.4
1,120,477	+		CCNA_01031	0.47	-1.4
1,120,477	+		CCNA_01031	0.47	-0.6
1,120,487	+		CCNA_01031	0.48	-0.4
1,120,492	+		CCNA_01031	0.48	-1.8
1,120,492	+		CCNA_01031	0.48	-0.6
1,120,492	+		CCNA_01031	0.48	-0.4
1,120,499	+		CCNA_01031	0.48	-1.7
1,120,499	+		CCNA_01031	0.48	-2.8
1,120,500	-		CCNA_01031	0.48	+0.3
1,120,500	-		CCNA_01031	0.48	-0.1
1,120,500	-		CCNA_01031	0.48	-1.8
1,120,500	-		CCNA_01031	0.48	-1.2
1,120,500	-		CCNA_01031	0.48	-0.1
1,120,500	-		CCNA_01031	0.48	+1.3
1,120,500	-		CCNA_01031	0.48	-0.4
1,120,500	-		CCNA_01031	0.48	-2.0
1,120,500	-		CCNA_01031	0.48	-0.3
1,120,507	-		CCNA_01031	0.49	-2.3
1,120,538	+		CCNA_01031	0.51	+0.1
1,120,543	+		CCNA_01031	0.51	-0.8
1,120,543	+		CCNA_01031	0.51	-1.0
1,120,543	+		CCNA_01031	0.51	-1.4
1,120,546	-		CCNA_01031	0.51	-0.6
1,120,551	-		CCNA_01031	0.51	-1.4
1,120,551	-		CCNA_01031	0.51	-1.5
1,120,612	+		CCNA_01031	0.55	+0.9
1,120,640	+		CCNA_01031	0.57	-0.1
1,120,648	-		CCNA_01031	0.57	-1.1
1,120,666	+		CCNA_01031	0.58	-0.3
1,120,717	+		CCNA_01031	0.61	-0.6
1,120,717	+		CCNA_01031	0.61	-0.9
1,120,717	+		CCNA_01031	0.61	-0.5
1,120,717	+		CCNA_01031	0.61	+0.4
1,120,717	+		CCNA_01031	0.61	-0.3
1,120,717	+		CCNA_01031	0.61	-0.3
1,120,717	+		CCNA_01031	0.61	-0.6
1,120,717	+		CCNA_01031	0.61	+0.9
1,120,717	+		CCNA_01031	0.61	-0.3
1,120,717	+		CCNA_01031	0.61	+1.9
1,120,722	+		CCNA_01031	0.62	-1.1
1,120,724	+		CCNA_01031	0.62	-0.6
1,120,725	-		CCNA_01031	0.62	-0.4
1,120,725	-		CCNA_01031	0.62	-2.5
1,120,725	-		CCNA_01031	0.62	-0.4
1,120,725	-		CCNA_01031	0.62	-0.7
1,120,725	-		CCNA_01031	0.62	-0.7
1,120,725	-				+1.1
1,120,725	-		CCNA_01031	0.62	-0.8
1,120,725	-		CCNA_01031	0.62	-1.6
1,120,725	-		CCNA_01031	0.62	-2.2
1,120,725	-		CCNA_01031	0.62	-2.5
1,120,725	-		CCNA_01031	0.62	-3.0
1,120,725	-		CCNA_01031	0.62	-1.9
1,120,779	+		CCNA_01031	0.65	-0.7
1,120,787	-		CCNA_01031	0.66	+1.7
1,120,798	+		CCNA_01031	0.66	-1.6
1,120,798	+		CCNA_01031	0.66	-1.9
1,120,804	+		CCNA_01031	0.67	-0.1
1,120,806	-		CCNA_01031	0.67	+0.9
1,120,812	-		CCNA_01031	0.67	-1.6
1,120,812	-		CCNA_01031	0.67	-1.3
1,120,812	-		CCNA_01031	0.67	-1.3
1,120,815	+		CCNA_01031	0.67	-0.8
1,120,833	-		CCNA_01031	0.68	+0.6
1,120,840	+		CCNA_01031	0.69	+0.0
1,120,848	-		CCNA_01031	0.69	+0.9
1,120,848	-		CCNA_01031	0.69	-1.5
1,120,863	-		CCNA_01031	0.70	-3.7
1,120,865	-		CCNA_01031	0.70	-2.2
1,120,870	+		CCNA_01031	0.71	-2.2
1,120,878	-		CCNA_01031	0.71	-1.4
1,120,949	+		CCNA_01031	0.75	-2.6
1,120,962	-		CCNA_01031	0.76	-0.9
1,121,002	+		CCNA_01031	0.79	-0.9
1,121,002	+		CCNA_01031	0.79	-0.4
1,121,002	+		CCNA_01031	0.79	-0.6
1,121,010	-		CCNA_01031	0.79	+0.4
1,121,010	-		CCNA_01031	0.79	-2.0
1,121,023	+		CCNA_01031	0.80	-1.0
1,121,093	-		CCNA_01031	0.84	+0.5
1,121,112	-		CCNA_01031	0.85	-1.4
1,121,137	+		CCNA_01031	0.87	-0.4
1,121,145	-		CCNA_01031	0.87	+1.3
1,121,160	+		CCNA_01031	0.88	-1.0
1,121,175	-		CCNA_01031	0.89	-1.3
1,121,192	+				-0.8
1,121,215	-				-1.5
1,121,224	-				-3.4
1,121,230	-				-0.8
1,121,274	-				-0.7
1,121,310	-				-0.6
1,121,324	-				-2.2
1,121,348	+				+0.3
1,121,425	+				-1.4
1,121,425	+				+0.3
1,121,427	+				-3.0
1,121,433	-				-0.9
1,121,433	-				-1.5
1,121,435	-				+0.6
1,121,440	-				-0.0
1,121,464	-				+0.1
1,121,519	+		CCNA_01032	0.13	-0.7
1,121,522	-		CCNA_01032	0.14	-0.1
1,121,524	-		CCNA_01032	0.14	-0.3
1,121,529	+		CCNA_01032	0.15	+0.2
1,121,537	-		CCNA_01032	0.16	-1.2
1,121,542	+		CCNA_01032	0.17	+1.6
1,121,547	+		CCNA_01032	0.18	-0.1
1,121,562	-		CCNA_01032	0.21	-2.5
1,121,575	+		CCNA_01032	0.23	+0.3
1,121,575	+		CCNA_01032	0.23	+0.3
1,121,575	+		CCNA_01032	0.23	+0.3
1,121,583	-		CCNA_01032	0.24	-0.2
1,121,583	-				+1.3
1,121,583	-		CCNA_01032	0.24	-1.7
1,121,583	-		CCNA_01032	0.24	-0.5
1,121,603	+		CCNA_01032	0.27	-0.4
1,121,647	+		CCNA_01032	0.35	+0.8
1,121,647	-		CCNA_01032	0.35	+0.4
1,121,652	+		CCNA_01032	0.36	+1.2
1,121,660	-		CCNA_01032	0.37	-1.6
1,121,683	-		CCNA_01032	0.41	-0.9
1,121,685	+		CCNA_01032	0.41	-0.5
1,121,686	+		CCNA_01032	0.41	+2.2
1,121,686	+		CCNA_01032	0.41	+1.3
1,121,686	+		CCNA_01032	0.41	+0.9
1,121,686	+		CCNA_01032	0.41	-0.2
1,121,694	-		CCNA_01032	0.43	-0.3
1,121,694	-		CCNA_01032	0.43	-2.1
1,121,694	-		CCNA_01032	0.43	+0.1
1,121,694	-		CCNA_01032	0.43	+0.1
1,121,696	+		CCNA_01032	0.43	+0.6
1,121,762	-		CCNA_01032	0.54	+0.5
1,121,778	-		CCNA_01032	0.57	-0.9
1,121,839	-		CCNA_01032	0.67	-1.3
1,121,848	+		CCNA_01032	0.69	+0.4
1,121,870	+		CCNA_01032	0.72	+0.7
1,121,873	-		CCNA_01032	0.73	-0.2
1,121,878	-		CCNA_01032	0.74	-0.9
1,121,894	-		CCNA_01032	0.76	-1.9
1,121,913	+		CCNA_01032	0.80	-1.0
1,121,913	-		CCNA_01032	0.80	+0.3
1,121,921	-		CCNA_01032	0.81	-2.3
1,121,947	-		CCNA_01032	0.85	+0.3
1,121,972	+		CCNA_01032	0.90	+1.0
1,121,973	+		CCNA_01032	0.90	-1.1
1,122,002	-				-0.2
1,122,002	-				-0.4
1,122,012	+				-0.1
1,122,028	+				+2.2
1,122,028	+				+1.9
1,122,028	+				+0.9
1,122,028	+				+0.3
1,122,036	-				-1.4
1,122,038	-				-0.9
1,122,040	+				+0.3
1,122,046	+				+0.2
1,122,052	+				+0.9
1,122,060	-				-0.6
1,122,077	+				+1.1
1,122,100	+		CCNA_01033	0.10	+1.0
1,122,108	+		CCNA_01033	0.11	+1.1
1,122,224	-		CCNA_01033	0.23	-3.2
1,122,269	+		CCNA_01033	0.27	+0.5
1,122,273	+		CCNA_01033	0.28	+0.6
1,122,292	-		CCNA_01033	0.30	-2.5
1,122,326	+		CCNA_01033	0.33	+1.0
1,122,326	+		CCNA_01033	0.33	+0.8
1,122,334	-		CCNA_01033	0.34	-0.7
1,122,350	+		CCNA_01033	0.35	+1.0
1,122,351	+		CCNA_01033	0.36	+0.8