Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS24740

Experiment: Carnitine Hydrochloride (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS24730 and BPHYT_RS24735 are separated by 93 nucleotidesBPHYT_RS24735 and BPHYT_RS24740 overlap by 4 nucleotidesBPHYT_RS24740 and BPHYT_RS24745 are separated by 148 nucleotides BPHYT_RS24730: BPHYT_RS24730 - AraC family transcriptional regulator, at 1,114,729 to 1,115,685 _RS24730 BPHYT_RS24735: BPHYT_RS24735 - transcriptional regulator, at 1,115,779 to 1,116,606 _RS24735 BPHYT_RS24740: BPHYT_RS24740 - RNA polymerase subunit sigma-24, at 1,116,603 to 1,117,121 _RS24740 BPHYT_RS24745: BPHYT_RS24745 - transcriptional regulator, at 1,117,270 to 1,117,992 _RS24745 Position (kb) 1116 1117 1118Strain fitness (log2 ratio) -2 -1 0 1at 1115.634 kb on + strandat 1116.734 kb on - strand, within BPHYT_RS24740at 1116.734 kb on - strand, within BPHYT_RS24740at 1116.802 kb on + strand, within BPHYT_RS24740at 1117.256 kb on + strandat 1117.257 kb on - strandat 1117.257 kb on - strandat 1117.470 kb on - strand, within BPHYT_RS24745at 1117.848 kb on - strand, within BPHYT_RS24745at 1118.051 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Carnitine Hydrochloride (N)
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1,115,634 + -0.3
1,116,734 - BPHYT_RS24740 0.25 +1.0
1,116,734 - BPHYT_RS24740 0.25 +0.9
1,116,802 + BPHYT_RS24740 0.38 -2.5
1,117,256 + -1.5
1,117,257 - +0.1
1,117,257 - -0.3
1,117,470 - BPHYT_RS24745 0.28 +0.1
1,117,848 - BPHYT_RS24745 0.80 +0.1
1,118,051 + +1.3

Or see this region's nucleotide sequence