Experiment: Carnitine Hydrochloride (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS24020 and BPHYT_RS24025 are separated by 180 nucleotides BPHYT_RS24025 and BPHYT_RS24030 are separated by 25 nucleotides BPHYT_RS24030 and BPHYT_RS24035 are separated by 55 nucleotides
BPHYT_RS24020: BPHYT_RS24020 - phenylalanine/histidine ammonia-lyase, at 953,797 to 955,446
_RS24020
BPHYT_RS24025: BPHYT_RS24025 - histidine utilization repressor, at 955,627 to 956,310
_RS24025
BPHYT_RS24030: BPHYT_RS24030 - histidine utilization repressor, at 956,336 to 957,139
_RS24030
BPHYT_RS24035: BPHYT_RS24035 - ATP-binding protein, at 957,195 to 958,064
_RS24035
Position (kb) 955
956
957 Strain fitness (log2 ratio) -2
-1
0
1 at 954.940 kb on + strand, within BPHYT_RS24020 at 954.941 kb on - strand, within BPHYT_RS24020 at 955.560 kb on + strand at 955.560 kb on + strand at 955.636 kb on + strand at 956.027 kb on - strand, within BPHYT_RS24025 at 956.038 kb on + strand, within BPHYT_RS24025 at 956.104 kb on + strand, within BPHYT_RS24025 at 956.105 kb on - strand, within BPHYT_RS24025 at 956.105 kb on - strand, within BPHYT_RS24025 at 956.150 kb on - strand, within BPHYT_RS24025 at 956.150 kb on - strand, within BPHYT_RS24025 at 956.171 kb on - strand, within BPHYT_RS24025 at 956.634 kb on + strand, within BPHYT_RS24030
Per-strain Table
Position Strand Gene LocusTag Fraction Carnitine Hydrochloride (N) remove 954,940 + BPHYT_RS24020 0.69 +0.2 954,941 - BPHYT_RS24020 0.69 -0.3 955,560 + +1.1 955,560 + -1.1 955,636 + +0.2 956,027 - BPHYT_RS24025 0.58 -2.5 956,038 + BPHYT_RS24025 0.60 +0.5 956,104 + BPHYT_RS24025 0.70 -0.4 956,105 - BPHYT_RS24025 0.70 +0.3 956,105 - BPHYT_RS24025 0.70 -0.1 956,150 - BPHYT_RS24025 0.76 -0.1 956,150 - BPHYT_RS24025 0.76 -0.1 956,171 - BPHYT_RS24025 0.80 +0.3 956,634 + BPHYT_RS24030 0.37 +0.7
Or see this region's nucleotide sequence