Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS23600

Experiment: Carnitine Hydrochloride (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS23590 and BPHYT_RS23595 are separated by 395 nucleotidesBPHYT_RS23595 and BPHYT_RS23600 are separated by 250 nucleotidesBPHYT_RS23600 and BPHYT_RS23605 are separated by 73 nucleotidesBPHYT_RS23605 and BPHYT_RS23610 are separated by 45 nucleotides BPHYT_RS23590: BPHYT_RS23590 - hypothetical protein, at 866,359 to 867,585 _RS23590 BPHYT_RS23595: BPHYT_RS23595 - hypothetical protein, at 867,981 to 868,166 _RS23595 BPHYT_RS23600: BPHYT_RS23600 - hypothetical protein, at 868,417 to 868,695 _RS23600 BPHYT_RS23605: BPHYT_RS23605 - hypothetical protein, at 868,769 to 869,050 _RS23605 BPHYT_RS23610: BPHYT_RS23610 - alpha/beta hydrolase, at 869,096 to 870,091 _RS23610 Position (kb) 868 869Strain fitness (log2 ratio) -1 0 1at 867.431 kb on - strand, within BPHYT_RS23590at 867.431 kb on - strand, within BPHYT_RS23590at 867.552 kb on - strandat 867.559 kb on + strandat 867.560 kb on - strandat 867.681 kb on + strandat 867.681 kb on + strandat 868.332 kb on + strandat 868.332 kb on + strandat 868.436 kb on + strandat 868.627 kb on + strand, within BPHYT_RS23600at 868.640 kb on - strand, within BPHYT_RS23600at 868.642 kb on + strand, within BPHYT_RS23600at 868.682 kb on - strandat 868.868 kb on + strand, within BPHYT_RS23605at 868.868 kb on + strand, within BPHYT_RS23605at 868.868 kb on + strand, within BPHYT_RS23605at 868.868 kb on + strand, within BPHYT_RS23605at 868.869 kb on - strand, within BPHYT_RS23605at 869.097 kb on + strandat 869.172 kb on + strandat 869.172 kb on + strandat 869.173 kb on - strandat 869.303 kb on + strand, within BPHYT_RS23610at 869.423 kb on - strand, within BPHYT_RS23610at 869.423 kb on - strand, within BPHYT_RS23610

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Per-strain Table

Position Strand Gene LocusTag Fraction Carnitine Hydrochloride (N)
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867,431 - BPHYT_RS23590 0.87 +0.7
867,431 - BPHYT_RS23590 0.87 +0.1
867,552 - +0.2
867,559 + -0.5
867,560 - +0.3
867,681 + +0.7
867,681 + +0.2
868,332 + -1.5
868,332 + -0.0
868,436 + -0.4
868,627 + BPHYT_RS23600 0.75 -0.7
868,640 - BPHYT_RS23600 0.80 -0.4
868,642 + BPHYT_RS23600 0.81 -1.7
868,682 - +0.5
868,868 + BPHYT_RS23605 0.35 -0.2
868,868 + BPHYT_RS23605 0.35 +0.0
868,868 + BPHYT_RS23605 0.35 -0.2
868,868 + BPHYT_RS23605 0.35 -0.7
868,869 - BPHYT_RS23605 0.35 -0.6
869,097 + -0.3
869,172 + -0.3
869,172 + -0.9
869,173 - +0.2
869,303 + BPHYT_RS23610 0.21 +0.8
869,423 - BPHYT_RS23610 0.33 -1.1
869,423 - BPHYT_RS23610 0.33 +0.4

Or see this region's nucleotide sequence