Experiment: Carnitine Hydrochloride (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS22380 and BPHYT_RS22385 are separated by 63 nucleotides BPHYT_RS22385 and BPHYT_RS22390 are separated by 41 nucleotides
BPHYT_RS22380: BPHYT_RS22380 - Carnitine 3-dehydrogenase (EC 1.1.1.108) <small>(from data)</small>, at 577,184 to 578,149
_RS22380
BPHYT_RS22385: BPHYT_RS22385 - hypothetical protein, at 578,213 to 579,142
_RS22385
BPHYT_RS22390: BPHYT_RS22390 - glycine/betaine ABC transporter substrate-binding protein, at 579,184 to 580,149
_RS22390
Position (kb) 578
579
580 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 577.440 kb on + strand, within BPHYT_RS22380 at 577.440 kb on + strand, within BPHYT_RS22380 at 577.441 kb on - strand, within BPHYT_RS22380 at 577.636 kb on - strand, within BPHYT_RS22380 at 577.711 kb on - strand, within BPHYT_RS22380 at 577.767 kb on + strand, within BPHYT_RS22380 at 577.925 kb on - strand, within BPHYT_RS22380 at 578.221 kb on - strand at 578.718 kb on + strand, within BPHYT_RS22385 at 578.719 kb on - strand, within BPHYT_RS22385 at 578.719 kb on - strand, within BPHYT_RS22385 at 578.719 kb on - strand, within BPHYT_RS22385 at 578.724 kb on + strand, within BPHYT_RS22385 at 578.725 kb on - strand, within BPHYT_RS22385 at 578.949 kb on + strand, within BPHYT_RS22385 at 578.950 kb on - strand, within BPHYT_RS22385 at 579.430 kb on - strand, within BPHYT_RS22390 at 579.430 kb on - strand, within BPHYT_RS22390 at 579.485 kb on + strand, within BPHYT_RS22390 at 579.485 kb on + strand, within BPHYT_RS22390 at 579.689 kb on + strand, within BPHYT_RS22390 at 579.762 kb on - strand, within BPHYT_RS22390 at 579.802 kb on - strand, within BPHYT_RS22390
Per-strain Table
Position Strand Gene LocusTag Fraction Carnitine Hydrochloride (N) remove 577,440 + BPHYT_RS22380 0.27 -0.7 577,440 + BPHYT_RS22380 0.27 -3.8 577,441 - BPHYT_RS22380 0.27 -1.4 577,636 - BPHYT_RS22380 0.47 -3.3 577,711 - BPHYT_RS22380 0.55 -3.7 577,767 + BPHYT_RS22380 0.60 -3.4 577,925 - BPHYT_RS22380 0.77 -2.4 578,221 - -1.7 578,718 + BPHYT_RS22385 0.54 -2.8 578,719 - BPHYT_RS22385 0.54 -2.9 578,719 - BPHYT_RS22385 0.54 -3.2 578,719 - BPHYT_RS22385 0.54 -2.5 578,724 + BPHYT_RS22385 0.55 -4.1 578,725 - BPHYT_RS22385 0.55 -3.3 578,949 + BPHYT_RS22385 0.79 -4.7 578,950 - BPHYT_RS22385 0.79 -2.4 579,430 - BPHYT_RS22390 0.25 -3.7 579,430 - BPHYT_RS22390 0.25 -2.7 579,485 + BPHYT_RS22390 0.31 -1.7 579,485 + BPHYT_RS22390 0.31 -3.2 579,689 + BPHYT_RS22390 0.52 -1.7 579,762 - BPHYT_RS22390 0.60 -1.4 579,802 - BPHYT_RS22390 0.64 -2.9
Or see this region's nucleotide sequence