Experiment: Carnitine Hydrochloride (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS22370 and BPHYT_RS22375 overlap by 8 nucleotides BPHYT_RS22375 and BPHYT_RS22380 are separated by 229 nucleotides BPHYT_RS22380 and BPHYT_RS22385 are separated by 63 nucleotides
BPHYT_RS22370: BPHYT_RS22370 - alpha/beta hydrolase, at 575,487 to 576,452
_RS22370
BPHYT_RS22375: BPHYT_RS22375 - 4-hydroxybenzoyl-CoA thioesterase, at 576,445 to 576,954
_RS22375
BPHYT_RS22380: BPHYT_RS22380 - Carnitine 3-dehydrogenase (EC 1.1.1.108) <small>(from data)</small>, at 577,184 to 578,149
_RS22380
BPHYT_RS22385: BPHYT_RS22385 - hypothetical protein, at 578,213 to 579,142
_RS22385
Position (kb) 577
578
579 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 576.347 kb on - strand, within BPHYT_RS22370 at 576.672 kb on - strand, within BPHYT_RS22375 at 576.752 kb on + strand, within BPHYT_RS22375 at 576.753 kb on - strand, within BPHYT_RS22375 at 576.759 kb on + strand, within BPHYT_RS22375 at 576.759 kb on + strand, within BPHYT_RS22375 at 576.760 kb on - strand, within BPHYT_RS22375 at 576.776 kb on + strand, within BPHYT_RS22375 at 576.777 kb on - strand, within BPHYT_RS22375 at 576.866 kb on + strand, within BPHYT_RS22375 at 576.867 kb on - strand, within BPHYT_RS22375 at 576.893 kb on + strand, within BPHYT_RS22375 at 577.440 kb on + strand, within BPHYT_RS22380 at 577.440 kb on + strand, within BPHYT_RS22380 at 577.441 kb on - strand, within BPHYT_RS22380 at 577.636 kb on - strand, within BPHYT_RS22380 at 577.711 kb on - strand, within BPHYT_RS22380 at 577.767 kb on + strand, within BPHYT_RS22380 at 577.925 kb on - strand, within BPHYT_RS22380 at 578.221 kb on - strand at 578.718 kb on + strand, within BPHYT_RS22385 at 578.719 kb on - strand, within BPHYT_RS22385 at 578.719 kb on - strand, within BPHYT_RS22385 at 578.719 kb on - strand, within BPHYT_RS22385 at 578.724 kb on + strand, within BPHYT_RS22385 at 578.725 kb on - strand, within BPHYT_RS22385 at 578.949 kb on + strand, within BPHYT_RS22385 at 578.950 kb on - strand, within BPHYT_RS22385
Per-strain Table
Position Strand Gene LocusTag Fraction Carnitine Hydrochloride (N) remove 576,347 - BPHYT_RS22370 0.89 +0.1 576,672 - BPHYT_RS22375 0.45 -4.7 576,752 + BPHYT_RS22375 0.60 -1.4 576,753 - BPHYT_RS22375 0.60 -1.0 576,759 + BPHYT_RS22375 0.62 -2.6 576,759 + BPHYT_RS22375 0.62 -3.9 576,760 - BPHYT_RS22375 0.62 -3.5 576,776 + BPHYT_RS22375 0.65 -4.7 576,777 - BPHYT_RS22375 0.65 -3.8 576,866 + BPHYT_RS22375 0.83 -2.4 576,867 - BPHYT_RS22375 0.83 -3.4 576,893 + BPHYT_RS22375 0.88 -1.7 577,440 + BPHYT_RS22380 0.27 -0.7 577,440 + BPHYT_RS22380 0.27 -3.8 577,441 - BPHYT_RS22380 0.27 -1.4 577,636 - BPHYT_RS22380 0.47 -3.3 577,711 - BPHYT_RS22380 0.55 -3.7 577,767 + BPHYT_RS22380 0.60 -3.4 577,925 - BPHYT_RS22380 0.77 -2.4 578,221 - -1.7 578,718 + BPHYT_RS22385 0.54 -2.8 578,719 - BPHYT_RS22385 0.54 -2.9 578,719 - BPHYT_RS22385 0.54 -3.2 578,719 - BPHYT_RS22385 0.54 -2.5 578,724 + BPHYT_RS22385 0.55 -4.1 578,725 - BPHYT_RS22385 0.55 -3.3 578,949 + BPHYT_RS22385 0.79 -4.7 578,950 - BPHYT_RS22385 0.79 -2.4
Or see this region's nucleotide sequence