Experiment: Carnitine Hydrochloride (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS03665 and BPHYT_RS03670 are separated by 490 nucleotides BPHYT_RS03670 and BPHYT_RS03675 are separated by 239 nucleotides
BPHYT_RS03665: BPHYT_RS03665 - hypothetical protein, at 833,154 to 833,519
_RS03665
BPHYT_RS03670: BPHYT_RS03670 - peptidase U34, at 834,010 to 835,467
_RS03670
BPHYT_RS03675: BPHYT_RS03675 - porin, at 835,707 to 836,924
_RS03675
Position (kb) 834
835
836 Strain fitness (log2 ratio) -2
-1
0
1
2 at 833.040 kb on - strand at 833.324 kb on - strand, within BPHYT_RS03665 at 833.349 kb on + strand, within BPHYT_RS03665 at 833.350 kb on - strand, within BPHYT_RS03665 at 833.350 kb on - strand, within BPHYT_RS03665 at 833.405 kb on + strand, within BPHYT_RS03665 at 833.406 kb on - strand, within BPHYT_RS03665 at 833.519 kb on + strand at 833.519 kb on + strand at 833.520 kb on - strand at 833.520 kb on - strand at 833.624 kb on - strand at 833.757 kb on + strand at 833.758 kb on - strand at 833.775 kb on - strand at 833.812 kb on - strand at 833.812 kb on - strand at 834.008 kb on - strand at 834.012 kb on - strand at 834.135 kb on + strand at 834.177 kb on - strand, within BPHYT_RS03670 at 834.416 kb on + strand, within BPHYT_RS03670 at 834.417 kb on - strand, within BPHYT_RS03670 at 834.460 kb on + strand, within BPHYT_RS03670 at 834.460 kb on + strand, within BPHYT_RS03670 at 834.461 kb on - strand, within BPHYT_RS03670 at 834.477 kb on - strand, within BPHYT_RS03670 at 834.486 kb on - strand, within BPHYT_RS03670 at 834.530 kb on + strand, within BPHYT_RS03670 at 834.558 kb on - strand, within BPHYT_RS03670 at 834.695 kb on + strand, within BPHYT_RS03670 at 834.701 kb on + strand, within BPHYT_RS03670 at 834.878 kb on + strand, within BPHYT_RS03670 at 834.879 kb on - strand, within BPHYT_RS03670 at 834.936 kb on - strand, within BPHYT_RS03670 at 835.097 kb on + strand, within BPHYT_RS03670 at 835.129 kb on + strand, within BPHYT_RS03670 at 835.129 kb on + strand, within BPHYT_RS03670 at 835.130 kb on - strand, within BPHYT_RS03670 at 835.170 kb on + strand, within BPHYT_RS03670 at 835.170 kb on + strand, within BPHYT_RS03670 at 835.220 kb on + strand, within BPHYT_RS03670 at 835.221 kb on - strand, within BPHYT_RS03670 at 835.307 kb on + strand, within BPHYT_RS03670 at 835.418 kb on - strand at 835.927 kb on + strand, within BPHYT_RS03675 at 835.972 kb on + strand, within BPHYT_RS03675 at 835.973 kb on - strand, within BPHYT_RS03675 at 835.976 kb on + strand, within BPHYT_RS03675 at 835.977 kb on - strand, within BPHYT_RS03675 at 835.977 kb on - strand, within BPHYT_RS03675 at 835.978 kb on + strand, within BPHYT_RS03675 at 836.083 kb on + strand, within BPHYT_RS03675 at 836.084 kb on - strand, within BPHYT_RS03675 at 836.084 kb on - strand, within BPHYT_RS03675 at 836.098 kb on + strand, within BPHYT_RS03675 at 836.108 kb on + strand, within BPHYT_RS03675 at 836.132 kb on + strand, within BPHYT_RS03675 at 836.132 kb on + strand, within BPHYT_RS03675 at 836.132 kb on + strand, within BPHYT_RS03675 at 836.132 kb on + strand, within BPHYT_RS03675 at 836.132 kb on + strand, within BPHYT_RS03675 at 836.132 kb on + strand, within BPHYT_RS03675 at 836.133 kb on - strand, within BPHYT_RS03675 at 836.133 kb on - strand, within BPHYT_RS03675 at 836.133 kb on - strand, within BPHYT_RS03675 at 836.135 kb on - strand, within BPHYT_RS03675 at 836.350 kb on + strand at 836.421 kb on - strand, within BPHYT_RS03675 at 836.447 kb on - strand, within BPHYT_RS03675
Per-strain Table
Position Strand Gene LocusTag Fraction Carnitine Hydrochloride (N) remove 833,040 - +0.2 833,324 - BPHYT_RS03665 0.46 -0.4 833,349 + BPHYT_RS03665 0.53 -0.2 833,350 - BPHYT_RS03665 0.54 -0.6 833,350 - BPHYT_RS03665 0.54 +1.3 833,405 + BPHYT_RS03665 0.69 -1.3 833,406 - BPHYT_RS03665 0.69 +0.6 833,519 + +0.7 833,519 + +1.0 833,520 - +0.1 833,520 - +0.0 833,624 - +0.2 833,757 + +0.2 833,758 - +1.0 833,775 - +0.4 833,812 - +1.3 833,812 - -0.7 834,008 - +0.9 834,012 - -2.7 834,135 + +0.0 834,177 - BPHYT_RS03670 0.11 -0.3 834,416 + BPHYT_RS03670 0.28 +0.7 834,417 - BPHYT_RS03670 0.28 +0.0 834,460 + BPHYT_RS03670 0.31 +0.5 834,460 + BPHYT_RS03670 0.31 +1.9 834,461 - BPHYT_RS03670 0.31 +0.1 834,477 - BPHYT_RS03670 0.32 -0.2 834,486 - BPHYT_RS03670 0.33 +0.3 834,530 + BPHYT_RS03670 0.36 -0.8 834,558 - BPHYT_RS03670 0.38 +0.9 834,695 + BPHYT_RS03670 0.47 +0.1 834,701 + BPHYT_RS03670 0.47 +0.4 834,878 + BPHYT_RS03670 0.60 -1.9 834,879 - BPHYT_RS03670 0.60 -0.2 834,936 - BPHYT_RS03670 0.64 -0.1 835,097 + BPHYT_RS03670 0.75 -0.4 835,129 + BPHYT_RS03670 0.77 -0.2 835,129 + BPHYT_RS03670 0.77 -0.3 835,130 - BPHYT_RS03670 0.77 +1.0 835,170 + BPHYT_RS03670 0.80 -0.2 835,170 + BPHYT_RS03670 0.80 -0.2 835,220 + BPHYT_RS03670 0.83 -0.5 835,221 - BPHYT_RS03670 0.83 -0.4 835,307 + BPHYT_RS03670 0.89 +0.1 835,418 - +0.5 835,927 + BPHYT_RS03675 0.18 +0.6 835,972 + BPHYT_RS03675 0.22 +0.8 835,973 - BPHYT_RS03675 0.22 -0.8 835,976 + BPHYT_RS03675 0.22 +0.8 835,977 - BPHYT_RS03675 0.22 +0.3 835,977 - BPHYT_RS03675 0.22 -0.2 835,978 + BPHYT_RS03675 0.22 +0.3 836,083 + BPHYT_RS03675 0.31 +0.1 836,084 - BPHYT_RS03675 0.31 -0.2 836,084 - BPHYT_RS03675 0.31 +0.5 836,098 + BPHYT_RS03675 0.32 -0.7 836,108 + BPHYT_RS03675 0.33 -0.5 836,132 + BPHYT_RS03675 0.35 +0.1 836,132 + BPHYT_RS03675 0.35 +0.1 836,132 + BPHYT_RS03675 0.35 +0.3 836,132 + BPHYT_RS03675 0.35 -0.3 836,132 + BPHYT_RS03675 0.35 +1.2 836,132 + BPHYT_RS03675 0.35 +0.0 836,133 - BPHYT_RS03675 0.35 -0.9 836,133 - BPHYT_RS03675 0.35 +1.3 836,133 - BPHYT_RS03675 0.35 +0.0 836,135 - BPHYT_RS03675 0.35 +0.2 836,350 + -1.0 836,421 - BPHYT_RS03675 0.59 -0.2 836,447 - BPHYT_RS03675 0.61 +1.2
Or see this region's nucleotide sequence