Experiment: Ceftazidime 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS18020 and ABZR86_RS18025 are separated by 3 nucleotides ABZR86_RS18025 and ABZR86_RS18030 overlap by 4 nucleotides
ABZR86_RS18020: ABZR86_RS18020 - MBL fold metallo-hydrolase, at 18,108 to 19,235
_RS18020
ABZR86_RS18025: ABZR86_RS18025 - poly-beta-1,6-N-acetyl-D-glucosamine biosynthesis protein PgaD, at 19,239 to 19,709
_RS18025
ABZR86_RS18030: ABZR86_RS18030 - poly-beta-1,6-N-acetyl-D-glucosamine synthase, at 19,706 to 20,953
_RS18030
Position (kb) 19
20 Strain fitness (log2 ratio) -1
0
1 at 18.568 kb on - strand, within ABZR86_RS18020 at 18.597 kb on + strand, within ABZR86_RS18020 at 18.598 kb on - strand, within ABZR86_RS18020 at 18.924 kb on + strand, within ABZR86_RS18020 at 18.924 kb on + strand, within ABZR86_RS18020 at 18.942 kb on + strand, within ABZR86_RS18020 at 19.445 kb on - strand, within ABZR86_RS18025 at 19.445 kb on - strand, within ABZR86_RS18025 at 19.445 kb on - strand, within ABZR86_RS18025 at 19.549 kb on + strand, within ABZR86_RS18025 at 19.842 kb on + strand, within ABZR86_RS18030 at 19.842 kb on + strand, within ABZR86_RS18030 at 19.842 kb on + strand, within ABZR86_RS18030 at 19.843 kb on - strand, within ABZR86_RS18030 at 20.000 kb on + strand, within ABZR86_RS18030 at 20.050 kb on - strand, within ABZR86_RS18030 at 20.050 kb on - strand, within ABZR86_RS18030 at 20.107 kb on - strand, within ABZR86_RS18030 at 20.107 kb on - strand, within ABZR86_RS18030 at 20.355 kb on + strand, within ABZR86_RS18030 at 20.489 kb on - strand, within ABZR86_RS18030 at 20.489 kb on - strand, within ABZR86_RS18030 at 20.514 kb on + strand, within ABZR86_RS18030
Per-strain Table
Position Strand Gene LocusTag Fraction Ceftazidime 0.05 mg/ml remove 18,568 - ABZR86_RS18020 0.41 +0.2 18,597 + ABZR86_RS18020 0.43 +0.3 18,598 - ABZR86_RS18020 0.43 +0.3 18,924 + ABZR86_RS18020 0.72 -0.1 18,924 + ABZR86_RS18020 0.72 -0.0 18,942 + ABZR86_RS18020 0.74 +1.0 19,445 - ABZR86_RS18025 0.44 +0.0 19,445 - ABZR86_RS18025 0.44 +0.9 19,445 - ABZR86_RS18025 0.44 +0.7 19,549 + ABZR86_RS18025 0.66 -0.3 19,842 + ABZR86_RS18030 0.11 -0.2 19,842 + ABZR86_RS18030 0.11 -0.1 19,842 + ABZR86_RS18030 0.11 +0.1 19,843 - ABZR86_RS18030 0.11 +0.5 20,000 + ABZR86_RS18030 0.24 +0.0 20,050 - ABZR86_RS18030 0.28 +0.4 20,050 - ABZR86_RS18030 0.28 -0.5 20,107 - ABZR86_RS18030 0.32 -0.4 20,107 - ABZR86_RS18030 0.32 -0.3 20,355 + ABZR86_RS18030 0.52 -0.4 20,489 - ABZR86_RS18030 0.63 +1.1 20,489 - ABZR86_RS18030 0.63 +0.7 20,514 + ABZR86_RS18030 0.65 +0.2
Or see this region's nucleotide sequence