Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS14590

Experiment: Ceftazidime 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS14585 and ABZR86_RS14590 are separated by 11 nucleotidesABZR86_RS14590 and ABZR86_RS14595 overlap by 4 nucleotidesABZR86_RS14595 and ABZR86_RS14600 are separated by 76 nucleotides ABZR86_RS14585: ABZR86_RS14585 - YafY family protein, at 3,264,196 to 3,265,152 _RS14585 ABZR86_RS14590: ABZR86_RS14590 - autotransporter outer membrane beta-barrel domain-containing protein, at 3,265,164 to 3,266,177 _RS14590 ABZR86_RS14595: ABZR86_RS14595 - hypothetical protein, at 3,266,174 to 3,266,641 _RS14595 ABZR86_RS14600: ABZR86_RS14600 - conjugative transfer signal peptidase TraF, at 3,266,718 to 3,267,305 _RS14600 Position (kb) 3265 3266 3267Strain fitness (log2 ratio) -1 0 1at 3264.199 kb on + strandat 3264.200 kb on - strandat 3264.313 kb on + strand, within ABZR86_RS14585at 3264.313 kb on + strand, within ABZR86_RS14585at 3264.377 kb on - strand, within ABZR86_RS14585at 3264.770 kb on + strand, within ABZR86_RS14585at 3264.770 kb on + strand, within ABZR86_RS14585at 3264.771 kb on - strand, within ABZR86_RS14585at 3265.249 kb on + strandat 3265.249 kb on + strandat 3265.402 kb on + strand, within ABZR86_RS14590at 3265.402 kb on + strand, within ABZR86_RS14590at 3265.402 kb on + strand, within ABZR86_RS14590at 3265.403 kb on - strand, within ABZR86_RS14590at 3265.403 kb on - strand, within ABZR86_RS14590at 3265.469 kb on + strand, within ABZR86_RS14590at 3265.503 kb on - strand, within ABZR86_RS14590at 3265.503 kb on - strand, within ABZR86_RS14590at 3265.517 kb on - strand, within ABZR86_RS14590at 3265.653 kb on + strand, within ABZR86_RS14590at 3265.670 kb on - strand, within ABZR86_RS14590at 3265.697 kb on - strand, within ABZR86_RS14590at 3265.697 kb on - strand, within ABZR86_RS14590at 3265.816 kb on + strand, within ABZR86_RS14590at 3266.094 kb on + strandat 3266.094 kb on + strandat 3266.524 kb on + strand, within ABZR86_RS14595at 3266.524 kb on + strand, within ABZR86_RS14595at 3266.524 kb on + strand, within ABZR86_RS14595at 3266.616 kb on - strandat 3266.661 kb on + strandat 3266.662 kb on - strandat 3266.804 kb on - strand, within ABZR86_RS14600at 3266.848 kb on - strand, within ABZR86_RS14600at 3266.848 kb on - strand, within ABZR86_RS14600at 3267.115 kb on + strand, within ABZR86_RS14600at 3267.115 kb on + strand, within ABZR86_RS14600at 3267.116 kb on - strand, within ABZR86_RS14600at 3267.116 kb on - strand, within ABZR86_RS14600at 3267.116 kb on - strand, within ABZR86_RS14600at 3267.116 kb on - strand, within ABZR86_RS14600

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Per-strain Table

Position Strand Gene LocusTag Fraction Ceftazidime 0.05 mg/ml
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3,264,199 + -0.1
3,264,200 - -0.2
3,264,313 + ABZR86_RS14585 0.12 +0.1
3,264,313 + ABZR86_RS14585 0.12 +0.8
3,264,377 - ABZR86_RS14585 0.19 -0.3
3,264,770 + ABZR86_RS14585 0.60 +0.2
3,264,770 + ABZR86_RS14585 0.60 +0.0
3,264,771 - ABZR86_RS14585 0.60 +0.1
3,265,249 + -0.4
3,265,249 + -0.3
3,265,402 + ABZR86_RS14590 0.23 -0.2
3,265,402 + ABZR86_RS14590 0.23 +0.1
3,265,402 + ABZR86_RS14590 0.23 -0.3
3,265,403 - ABZR86_RS14590 0.24 +0.7
3,265,403 - ABZR86_RS14590 0.24 +0.1
3,265,469 + ABZR86_RS14590 0.30 +0.2
3,265,503 - ABZR86_RS14590 0.33 -0.4
3,265,503 - ABZR86_RS14590 0.33 -1.0
3,265,517 - ABZR86_RS14590 0.35 -0.6
3,265,653 + ABZR86_RS14590 0.48 +0.1
3,265,670 - ABZR86_RS14590 0.50 +0.7
3,265,697 - ABZR86_RS14590 0.53 -0.7
3,265,697 - ABZR86_RS14590 0.53 +0.2
3,265,816 + ABZR86_RS14590 0.64 +0.6
3,266,094 + -0.1
3,266,094 + +0.1
3,266,524 + ABZR86_RS14595 0.75 +0.2
3,266,524 + ABZR86_RS14595 0.75 +1.0
3,266,524 + ABZR86_RS14595 0.75 +0.7
3,266,616 - +0.4
3,266,661 + +0.7
3,266,662 - -0.6
3,266,804 - ABZR86_RS14600 0.15 -0.2
3,266,848 - ABZR86_RS14600 0.22 +0.9
3,266,848 - ABZR86_RS14600 0.22 -0.6
3,267,115 + ABZR86_RS14600 0.68 -0.3
3,267,115 + ABZR86_RS14600 0.68 +0.5
3,267,116 - ABZR86_RS14600 0.68 -0.2
3,267,116 - ABZR86_RS14600 0.68 -0.2
3,267,116 - ABZR86_RS14600 0.68 -0.8
3,267,116 - ABZR86_RS14600 0.68 -0.4

Or see this region's nucleotide sequence