Experiment: Ceftazidime 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS03570 and ABZR86_RS03575 overlap by 4 nucleotides ABZR86_RS03575 and ABZR86_RS03580 overlap by 1 nucleotides ABZR86_RS03580 and ABZR86_RS03585 are separated by 265 nucleotides
ABZR86_RS03570: ABZR86_RS03570 - extracellular solute-binding protein, at 762,067 to 762,978
_RS03570
ABZR86_RS03575: ABZR86_RS03575 - ABC transporter permease subunit, at 762,975 to 763,757
_RS03575
ABZR86_RS03580: ABZR86_RS03580 - ABC transporter ATP-binding protein, at 763,757 to 764,752
_RS03580
ABZR86_RS03585: ABZR86_RS03585 - FdhF/YdeP family oxidoreductase, at 765,018 to 767,342
_RS03585
Position (kb) 763
764
765 Strain fitness (log2 ratio) -2
-1
0
1 at 762.848 kb on - strand, within ABZR86_RS03570 at 763.146 kb on + strand, within ABZR86_RS03575 at 763.147 kb on - strand, within ABZR86_RS03575 at 763.305 kb on + strand, within ABZR86_RS03575 at 763.305 kb on + strand, within ABZR86_RS03575 at 763.305 kb on + strand, within ABZR86_RS03575 at 763.305 kb on + strand, within ABZR86_RS03575 at 763.305 kb on + strand, within ABZR86_RS03575 at 763.305 kb on + strand, within ABZR86_RS03575 at 763.305 kb on + strand, within ABZR86_RS03575 at 763.306 kb on - strand, within ABZR86_RS03575 at 763.306 kb on - strand, within ABZR86_RS03575 at 763.306 kb on - strand, within ABZR86_RS03575 at 763.306 kb on - strand, within ABZR86_RS03575 at 763.395 kb on + strand, within ABZR86_RS03575 at 763.395 kb on + strand, within ABZR86_RS03575 at 763.396 kb on - strand, within ABZR86_RS03575 at 763.396 kb on - strand, within ABZR86_RS03575 at 763.410 kb on + strand, within ABZR86_RS03575 at 763.411 kb on - strand, within ABZR86_RS03575 at 763.411 kb on - strand, within ABZR86_RS03575 at 763.411 kb on - strand, within ABZR86_RS03575 at 763.413 kb on + strand, within ABZR86_RS03575 at 763.413 kb on + strand, within ABZR86_RS03575 at 763.413 kb on + strand, within ABZR86_RS03575 at 763.413 kb on + strand, within ABZR86_RS03575 at 763.413 kb on + strand, within ABZR86_RS03575 at 763.414 kb on - strand, within ABZR86_RS03575 at 763.414 kb on - strand, within ABZR86_RS03575 at 763.414 kb on - strand, within ABZR86_RS03575 at 763.414 kb on - strand, within ABZR86_RS03575 at 763.486 kb on - strand, within ABZR86_RS03575 at 763.609 kb on - strand, within ABZR86_RS03575 at 763.609 kb on - strand, within ABZR86_RS03575 at 763.609 kb on - strand, within ABZR86_RS03575 at 763.609 kb on - strand, within ABZR86_RS03575 at 763.674 kb on + strand, within ABZR86_RS03575 at 763.674 kb on + strand, within ABZR86_RS03575 at 763.943 kb on + strand, within ABZR86_RS03580 at 763.943 kb on + strand, within ABZR86_RS03580 at 764.622 kb on - strand, within ABZR86_RS03580 at 764.774 kb on + strand at 764.775 kb on - strand at 764.775 kb on - strand at 764.860 kb on + strand at 764.861 kb on - strand at 764.861 kb on - strand at 764.973 kb on + strand at 764.973 kb on + strand at 764.974 kb on - strand at 764.974 kb on - strand at 765.221 kb on + strand at 765.221 kb on + strand at 765.222 kb on - strand at 765.222 kb on - strand at 765.222 kb on - strand at 765.408 kb on + strand, within ABZR86_RS03585 at 765.408 kb on + strand, within ABZR86_RS03585 at 765.409 kb on - strand, within ABZR86_RS03585 at 765.409 kb on - strand, within ABZR86_RS03585 at 765.409 kb on - strand, within ABZR86_RS03585 at 765.492 kb on + strand, within ABZR86_RS03585 at 765.493 kb on - strand, within ABZR86_RS03585 at 765.493 kb on - strand, within ABZR86_RS03585
Per-strain Table
Position Strand Gene LocusTag Fraction Ceftazidime 0.05 mg/ml remove 762,848 - ABZR86_RS03570 0.86 -0.1 763,146 + ABZR86_RS03575 0.22 -0.1 763,147 - ABZR86_RS03575 0.22 -0.4 763,305 + ABZR86_RS03575 0.42 +0.2 763,305 + ABZR86_RS03575 0.42 -0.1 763,305 + ABZR86_RS03575 0.42 -0.3 763,305 + ABZR86_RS03575 0.42 +0.4 763,305 + ABZR86_RS03575 0.42 +0.0 763,305 + ABZR86_RS03575 0.42 +0.3 763,305 + ABZR86_RS03575 0.42 +0.3 763,306 - ABZR86_RS03575 0.42 +0.4 763,306 - ABZR86_RS03575 0.42 -0.4 763,306 - ABZR86_RS03575 0.42 +0.5 763,306 - ABZR86_RS03575 0.42 -0.0 763,395 + ABZR86_RS03575 0.54 -0.8 763,395 + ABZR86_RS03575 0.54 -0.1 763,396 - ABZR86_RS03575 0.54 +0.1 763,396 - ABZR86_RS03575 0.54 +0.5 763,410 + ABZR86_RS03575 0.56 -0.0 763,411 - ABZR86_RS03575 0.56 -0.0 763,411 - ABZR86_RS03575 0.56 -0.7 763,411 - ABZR86_RS03575 0.56 +0.5 763,413 + ABZR86_RS03575 0.56 +0.2 763,413 + ABZR86_RS03575 0.56 +0.4 763,413 + ABZR86_RS03575 0.56 -0.4 763,413 + ABZR86_RS03575 0.56 -0.4 763,413 + ABZR86_RS03575 0.56 +0.2 763,414 - ABZR86_RS03575 0.56 +0.0 763,414 - ABZR86_RS03575 0.56 +0.7 763,414 - ABZR86_RS03575 0.56 -1.6 763,414 - ABZR86_RS03575 0.56 +0.2 763,486 - ABZR86_RS03575 0.65 -0.2 763,609 - ABZR86_RS03575 0.81 -0.3 763,609 - ABZR86_RS03575 0.81 +0.6 763,609 - ABZR86_RS03575 0.81 +0.5 763,609 - ABZR86_RS03575 0.81 -0.4 763,674 + ABZR86_RS03575 0.89 -0.0 763,674 + ABZR86_RS03575 0.89 -0.2 763,943 + ABZR86_RS03580 0.19 +0.5 763,943 + ABZR86_RS03580 0.19 +0.1 764,622 - ABZR86_RS03580 0.87 +0.4 764,774 + -0.3 764,775 - -0.1 764,775 - +0.8 764,860 + +1.0 764,861 - +0.5 764,861 - +0.7 764,973 + +0.1 764,973 + -0.3 764,974 - +0.2 764,974 - +0.5 765,221 + -0.1 765,221 + -1.1 765,222 - +0.3 765,222 - -0.4 765,222 - +0.5 765,408 + ABZR86_RS03585 0.17 +1.0 765,408 + ABZR86_RS03585 0.17 -0.5 765,409 - ABZR86_RS03585 0.17 +0.1 765,409 - ABZR86_RS03585 0.17 -2.0 765,409 - ABZR86_RS03585 0.17 -0.2 765,492 + ABZR86_RS03585 0.20 -1.2 765,493 - ABZR86_RS03585 0.20 +0.5 765,493 - ABZR86_RS03585 0.20 -0.1
Or see this region's nucleotide sequence