Experiment: Ceftazidime 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS03305 and ABZR86_RS03310 are separated by 196 nucleotides ABZR86_RS03310 and ABZR86_RS03315 are separated by 5 nucleotides ABZR86_RS03315 and ABZR86_RS03320 are separated by 39 nucleotides ABZR86_RS03320 and ABZR86_RS03325 overlap by 1 nucleotides ABZR86_RS03325 and ABZR86_RS03330 overlap by 4 nucleotides
ABZR86_RS03305: ABZR86_RS03305 - phage tail sheath C-terminal domain-containing protein, at 695,051 to 696,439
_RS03305
ABZR86_RS03310: ABZR86_RS03310 - phage tail protein, at 696,636 to 697,076
_RS03310
ABZR86_RS03315: ABZR86_RS03315 - phage tail protein, at 697,082 to 697,537
_RS03315
ABZR86_RS03320: ABZR86_RS03320 - DUF5908 family protein, at 697,577 to 697,765
_RS03320
ABZR86_RS03325: ABZR86_RS03325 - hypothetical protein, at 697,765 to 698,490
_RS03325
ABZR86_RS03330: ABZR86_RS03330 - type VI secretion system tip protein VgrG, at 698,487 to 700,253
_RS03330
Position (kb) 697
698 Strain fitness (log2 ratio) -1
0
1 at 696.598 kb on - strand at 696.652 kb on - strand at 697.091 kb on + strand at 697.092 kb on - strand at 697.112 kb on + strand at 697.115 kb on + strand at 697.116 kb on - strand at 697.199 kb on + strand, within ABZR86_RS03315 at 697.268 kb on + strand, within ABZR86_RS03315 at 697.505 kb on + strand at 697.535 kb on + strand at 697.536 kb on - strand at 697.543 kb on - strand at 697.888 kb on + strand, within ABZR86_RS03325 at 697.889 kb on - strand, within ABZR86_RS03325 at 697.901 kb on - strand, within ABZR86_RS03325 at 697.901 kb on - strand, within ABZR86_RS03325 at 697.960 kb on + strand, within ABZR86_RS03325 at 697.961 kb on - strand, within ABZR86_RS03325 at 697.961 kb on - strand, within ABZR86_RS03325 at 697.966 kb on + strand, within ABZR86_RS03325 at 698.179 kb on + strand, within ABZR86_RS03325 at 698.180 kb on - strand, within ABZR86_RS03325 at 698.368 kb on + strand, within ABZR86_RS03325 at 698.372 kb on - strand, within ABZR86_RS03325
Per-strain Table
Position Strand Gene LocusTag Fraction Ceftazidime 0.05 mg/ml remove 696,598 - -0.5 696,652 - +0.6 697,091 + -1.6 697,092 - +0.4 697,112 + +0.1 697,115 + +0.4 697,116 - +0.3 697,199 + ABZR86_RS03315 0.26 +1.0 697,268 + ABZR86_RS03315 0.41 +0.7 697,505 + +0.6 697,535 + -0.5 697,536 - +0.2 697,543 - +0.2 697,888 + ABZR86_RS03325 0.17 +1.1 697,889 - ABZR86_RS03325 0.17 +0.5 697,901 - ABZR86_RS03325 0.19 +0.4 697,901 - ABZR86_RS03325 0.19 +0.2 697,960 + ABZR86_RS03325 0.27 -0.3 697,961 - ABZR86_RS03325 0.27 -0.2 697,961 - ABZR86_RS03325 0.27 -0.2 697,966 + ABZR86_RS03325 0.28 +0.3 698,179 + ABZR86_RS03325 0.57 -0.1 698,180 - ABZR86_RS03325 0.57 -0.2 698,368 + ABZR86_RS03325 0.83 +0.8 698,372 - ABZR86_RS03325 0.84 +0.8
Or see this region's nucleotide sequence