Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS00040

Experiment: Ceftazidime 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS00035 and ABZR86_RS00040 are separated by 246 nucleotidesABZR86_RS00040 and ABZR86_RS00045 are separated by 43 nucleotides ABZR86_RS00035: ABZR86_RS00035 - monovalent cation:proton antiporter-2 (CPA2) family protein, at 6,382 to 8,079 _RS00035 ABZR86_RS00040: ABZR86_RS00040 - hypothetical protein, at 8,326 to 9,372 _RS00040 ABZR86_RS00045: ABZR86_RS00045 - hypothetical protein, at 9,416 to 10,147 _RS00045 Position (kb) 8 9 10Strain fitness (log2 ratio) -2 -1 0 1at 7.336 kb on + strand, within ABZR86_RS00035at 7.669 kb on + strand, within ABZR86_RS00035at 7.738 kb on + strand, within ABZR86_RS00035at 7.738 kb on + strand, within ABZR86_RS00035at 7.739 kb on - strand, within ABZR86_RS00035at 8.355 kb on - strandat 8.435 kb on + strand, within ABZR86_RS00040at 8.435 kb on + strand, within ABZR86_RS00040at 8.436 kb on - strand, within ABZR86_RS00040at 8.526 kb on + strand, within ABZR86_RS00040at 8.681 kb on + strand, within ABZR86_RS00040at 8.815 kb on + strand, within ABZR86_RS00040at 8.815 kb on + strand, within ABZR86_RS00040at 8.815 kb on + strand, within ABZR86_RS00040at 8.816 kb on - strand, within ABZR86_RS00040at 8.816 kb on - strand, within ABZR86_RS00040at 8.816 kb on - strand, within ABZR86_RS00040at 8.816 kb on - strand, within ABZR86_RS00040at 8.816 kb on - strand, within ABZR86_RS00040at 8.816 kb on - strand, within ABZR86_RS00040at 8.816 kb on - strand, within ABZR86_RS00040at 8.871 kb on + strand, within ABZR86_RS00040at 8.997 kb on - strand, within ABZR86_RS00040at 9.090 kb on + strand, within ABZR86_RS00040at 9.090 kb on + strand, within ABZR86_RS00040at 9.151 kb on + strand, within ABZR86_RS00040at 9.152 kb on - strand, within ABZR86_RS00040at 9.205 kb on + strand, within ABZR86_RS00040at 9.435 kb on + strandat 9.435 kb on + strandat 9.522 kb on + strand, within ABZR86_RS00045at 9.522 kb on + strand, within ABZR86_RS00045at 9.523 kb on - strand, within ABZR86_RS00045at 9.523 kb on - strand, within ABZR86_RS00045at 9.525 kb on + strand, within ABZR86_RS00045at 9.526 kb on - strand, within ABZR86_RS00045at 9.532 kb on - strand, within ABZR86_RS00045at 9.627 kb on + strand, within ABZR86_RS00045at 9.627 kb on + strand, within ABZR86_RS00045at 9.627 kb on + strand, within ABZR86_RS00045at 9.627 kb on + strand, within ABZR86_RS00045at 9.628 kb on - strand, within ABZR86_RS00045at 9.634 kb on - strand, within ABZR86_RS00045at 9.697 kb on - strand, within ABZR86_RS00045at 9.727 kb on - strand, within ABZR86_RS00045at 9.774 kb on + strand, within ABZR86_RS00045at 9.774 kb on + strand, within ABZR86_RS00045at 9.774 kb on + strand, within ABZR86_RS00045at 9.774 kb on + strand, within ABZR86_RS00045at 9.775 kb on - strand, within ABZR86_RS00045at 9.775 kb on - strand, within ABZR86_RS00045at 9.775 kb on - strand, within ABZR86_RS00045at 9.775 kb on - strand, within ABZR86_RS00045at 9.842 kb on + strand, within ABZR86_RS00045at 9.843 kb on - strand, within ABZR86_RS00045at 9.843 kb on - strand, within ABZR86_RS00045at 9.967 kb on - strand, within ABZR86_RS00045at 9.967 kb on - strand, within ABZR86_RS00045at 9.999 kb on + strand, within ABZR86_RS00045at 9.999 kb on + strand, within ABZR86_RS00045at 10.000 kb on - strand, within ABZR86_RS00045at 10.194 kb on + strandat 10.195 kb on - strandat 10.364 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ceftazidime 0.05 mg/ml
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7,336 + ABZR86_RS00035 0.56 -1.7
7,669 + ABZR86_RS00035 0.76 +0.5
7,738 + ABZR86_RS00035 0.80 -0.1
7,738 + ABZR86_RS00035 0.80 +0.6
7,739 - ABZR86_RS00035 0.80 -0.2
8,355 - +0.7
8,435 + ABZR86_RS00040 0.10 +0.2
8,435 + ABZR86_RS00040 0.10 -0.0
8,436 - ABZR86_RS00040 0.11 -2.1
8,526 + ABZR86_RS00040 0.19 +0.3
8,681 + ABZR86_RS00040 0.34 +1.0
8,815 + ABZR86_RS00040 0.47 +1.0
8,815 + ABZR86_RS00040 0.47 -0.4
8,815 + ABZR86_RS00040 0.47 -0.1
8,816 - ABZR86_RS00040 0.47 -0.2
8,816 - ABZR86_RS00040 0.47 -0.2
8,816 - ABZR86_RS00040 0.47 +0.8
8,816 - ABZR86_RS00040 0.47 +0.3
8,816 - ABZR86_RS00040 0.47 -0.3
8,816 - ABZR86_RS00040 0.47 +0.9
8,816 - ABZR86_RS00040 0.47 +0.3
8,871 + ABZR86_RS00040 0.52 -0.7
8,997 - ABZR86_RS00040 0.64 +0.6
9,090 + ABZR86_RS00040 0.73 -2.0
9,090 + ABZR86_RS00040 0.73 -0.4
9,151 + ABZR86_RS00040 0.79 -0.5
9,152 - ABZR86_RS00040 0.79 -0.5
9,205 + ABZR86_RS00040 0.84 -1.0
9,435 + +0.1
9,435 + +1.1
9,522 + ABZR86_RS00045 0.14 -0.0
9,522 + ABZR86_RS00045 0.14 +0.0
9,523 - ABZR86_RS00045 0.15 +0.3
9,523 - ABZR86_RS00045 0.15 -0.5
9,525 + ABZR86_RS00045 0.15 -0.5
9,526 - ABZR86_RS00045 0.15 -1.3
9,532 - ABZR86_RS00045 0.16 -0.8
9,627 + ABZR86_RS00045 0.29 -0.8
9,627 + ABZR86_RS00045 0.29 -0.5
9,627 + ABZR86_RS00045 0.29 -0.2
9,627 + ABZR86_RS00045 0.29 +0.6
9,628 - ABZR86_RS00045 0.29 +0.4
9,634 - ABZR86_RS00045 0.30 -1.0
9,697 - ABZR86_RS00045 0.38 -0.2
9,727 - ABZR86_RS00045 0.42 -0.2
9,774 + ABZR86_RS00045 0.49 -0.2
9,774 + ABZR86_RS00045 0.49 +0.0
9,774 + ABZR86_RS00045 0.49 -0.6
9,774 + ABZR86_RS00045 0.49 -1.5
9,775 - ABZR86_RS00045 0.49 +0.3
9,775 - ABZR86_RS00045 0.49 +0.1
9,775 - ABZR86_RS00045 0.49 -0.2
9,775 - ABZR86_RS00045 0.49 +0.3
9,842 + ABZR86_RS00045 0.58 +0.9
9,843 - ABZR86_RS00045 0.58 +1.0
9,843 - ABZR86_RS00045 0.58 -0.2
9,967 - ABZR86_RS00045 0.75 +0.4
9,967 - ABZR86_RS00045 0.75 -0.1
9,999 + ABZR86_RS00045 0.80 -0.1
9,999 + ABZR86_RS00045 0.80 -0.2
10,000 - ABZR86_RS00045 0.80 -0.2
10,194 + +0.2
10,195 - +0.2
10,364 - +0.0

Or see this region's nucleotide sequence