Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2820

Experiment: MoYLS4 with Cephalothin 0.625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2819 and DvMF_2820 are separated by 81 nucleotidesDvMF_2820 and DvMF_2821 are separated by 85 nucleotides DvMF_2819: DvMF_2819 - conserved hypothetical radical SAM protein (RefSeq), at 3,564,308 to 3,565,426 _2819 DvMF_2820: DvMF_2820 - rod shape-determining protein MreB (RefSeq), at 3,565,508 to 3,566,548 _2820 DvMF_2821: DvMF_2821 - rod shape-determining protein MreC (RefSeq), at 3,566,634 to 3,567,593 _2821 Position (kb) 3565 3566 3567Strain fitness (log2 ratio) -3 -2 -1 0 1at 3564.553 kb on - strand, within DvMF_2819at 3564.553 kb on - strand, within DvMF_2819at 3564.707 kb on + strand, within DvMF_2819at 3564.789 kb on - strand, within DvMF_2819at 3564.805 kb on + strand, within DvMF_2819at 3564.853 kb on - strand, within DvMF_2819at 3564.869 kb on - strand, within DvMF_2819at 3565.069 kb on - strand, within DvMF_2819at 3565.177 kb on + strand, within DvMF_2819at 3565.212 kb on - strand, within DvMF_2819at 3566.543 kb on + strandat 3567.490 kb on - strand, within DvMF_2821

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Cephalothin 0.625 mg/ml
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3,564,553 - DvMF_2819 0.22 -0.3
3,564,553 - DvMF_2819 0.22 -0.3
3,564,707 + DvMF_2819 0.36 +0.1
3,564,789 - DvMF_2819 0.43 -0.1
3,564,805 + DvMF_2819 0.44 -0.9
3,564,853 - DvMF_2819 0.49 -0.1
3,564,869 - DvMF_2819 0.50 -0.2
3,565,069 - DvMF_2819 0.68 -0.8
3,565,177 + DvMF_2819 0.78 -0.9
3,565,212 - DvMF_2819 0.81 -0.8
3,566,543 + -2.9
3,567,490 - DvMF_2821 0.89 -3.3

Or see this region's nucleotide sequence