Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2626

Experiment: MoYLS4 with Cephalothin 0.625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2625 and DvMF_2626 are separated by 50 nucleotidesDvMF_2626 and DvMF_2627 are separated by 395 nucleotides DvMF_2625: DvMF_2625 - Phosphate butyryltransferase (RefSeq), at 3,315,507 to 3,316,481 _2625 DvMF_2626: DvMF_2626 - butyrate kinase (RefSeq), at 3,316,532 to 3,317,893 _2626 DvMF_2627: DvMF_2627 - transcriptional regulator, TetR family (RefSeq), at 3,318,289 to 3,318,849 _2627 Position (kb) 3316 3317 3318Strain fitness (log2 ratio) -1 0 1at 3315.710 kb on + strand, within DvMF_2625at 3315.737 kb on + strand, within DvMF_2625at 3315.783 kb on - strand, within DvMF_2625at 3315.792 kb on + strand, within DvMF_2625at 3316.323 kb on - strand, within DvMF_2625at 3316.384 kb on - strandat 3316.485 kb on + strandat 3316.597 kb on - strandat 3316.775 kb on + strand, within DvMF_2626at 3316.982 kb on - strand, within DvMF_2626at 3317.099 kb on - strand, within DvMF_2626at 3317.132 kb on - strand, within DvMF_2626at 3317.953 kb on + strandat 3317.953 kb on + strandat 3317.961 kb on - strandat 3318.138 kb on + strandat 3318.150 kb on + strandat 3318.654 kb on + strand, within DvMF_2627at 3318.662 kb on - strand, within DvMF_2627at 3318.760 kb on + strand, within DvMF_2627at 3318.821 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Cephalothin 0.625 mg/ml
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3,315,710 + DvMF_2625 0.21 -0.1
3,315,737 + DvMF_2625 0.24 -0.2
3,315,783 - DvMF_2625 0.28 -0.6
3,315,792 + DvMF_2625 0.29 -0.5
3,316,323 - DvMF_2625 0.84 -0.3
3,316,384 - -0.3
3,316,485 + -0.1
3,316,597 - -0.2
3,316,775 + DvMF_2626 0.18 +0.1
3,316,982 - DvMF_2626 0.33 +0.1
3,317,099 - DvMF_2626 0.42 -0.5
3,317,132 - DvMF_2626 0.44 -0.5
3,317,953 + -0.4
3,317,953 + -0.2
3,317,961 - +0.1
3,318,138 + -0.3
3,318,150 + -0.4
3,318,654 + DvMF_2627 0.65 -0.3
3,318,662 - DvMF_2627 0.66 -0.1
3,318,760 + DvMF_2627 0.84 -0.3
3,318,821 + -0.4

Or see this region's nucleotide sequence