Experiment: MoYLS4 with Cephalothin 0.625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2162 and DvMF_2163 are separated by 121 nucleotides DvMF_2163 and DvMF_2164 are separated by 24 nucleotides
DvMF_2162: DvMF_2162 - RND efflux system, outer membrane lipoprotein, NodT family (RefSeq), at 2,695,124 to 2,696,593
_2162
DvMF_2163: DvMF_2163 - transporter, hydrophobe/amphiphile efflux-1 (HAE1) family (RefSeq), at 2,696,715 to 2,699,951
_2163
DvMF_2164: DvMF_2164 - efflux transporter, RND family, MFP subunit (RefSeq), at 2,699,976 to 2,701,193
_2164
Position (kb)
2696
2697
2698
2699
2700 Strain fitness (log2 ratio)
-6
-5
-4
-3
-2
-1
0
1 at 2695.973 kb on + strand, within DvMF_2162 at 2696.082 kb on - strand, within DvMF_2162 at 2696.280 kb on + strand, within DvMF_2162 at 2696.413 kb on - strand, within DvMF_2162 at 2696.580 kb on + strand at 2696.704 kb on + strand at 2696.712 kb on - strand at 2696.822 kb on - strand at 2697.009 kb on + strand at 2697.017 kb on - strand at 2697.215 kb on + strand, within DvMF_2163 at 2697.234 kb on - strand, within DvMF_2163 at 2697.310 kb on + strand, within DvMF_2163 at 2697.439 kb on + strand, within DvMF_2163 at 2697.447 kb on - strand, within DvMF_2163 at 2697.447 kb on - strand, within DvMF_2163 at 2697.447 kb on - strand, within DvMF_2163 at 2697.462 kb on - strand, within DvMF_2163 at 2697.467 kb on - strand, within DvMF_2163 at 2697.745 kb on + strand, within DvMF_2163 at 2697.925 kb on - strand, within DvMF_2163 at 2697.999 kb on - strand, within DvMF_2163 at 2698.211 kb on + strand, within DvMF_2163 at 2698.246 kb on + strand, within DvMF_2163 at 2698.251 kb on + strand, within DvMF_2163 at 2698.592 kb on - strand, within DvMF_2163 at 2698.614 kb on + strand, within DvMF_2163 at 2698.676 kb on + strand, within DvMF_2163 at 2698.970 kb on + strand, within DvMF_2163 at 2699.168 kb on + strand, within DvMF_2163 at 2699.234 kb on + strand, within DvMF_2163 at 2699.398 kb on + strand, within DvMF_2163 at 2699.424 kb on + strand, within DvMF_2163 at 2699.595 kb on - strand, within DvMF_2163 at 2699.807 kb on - strand at 2699.907 kb on - strand at 2700.042 kb on + strand at 2700.102 kb on + strand, within DvMF_2164 at 2700.224 kb on + strand, within DvMF_2164 at 2700.224 kb on + strand, within DvMF_2164 at 2700.232 kb on - strand, within DvMF_2164 at 2700.255 kb on + strand, within DvMF_2164 at 2700.262 kb on + strand, within DvMF_2164 at 2700.340 kb on + strand, within DvMF_2164 at 2700.410 kb on + strand, within DvMF_2164 at 2700.430 kb on - strand, within DvMF_2164 at 2700.519 kb on - strand, within DvMF_2164 at 2700.596 kb on - strand, within DvMF_2164 at 2700.800 kb on - strand, within DvMF_2164 at 2700.893 kb on + strand, within DvMF_2164 at 2700.901 kb on - strand, within DvMF_2164 at 2700.901 kb on - strand, within DvMF_2164
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Cephalothin 0.625 mg/ml remove 2,695,973 + DvMF_2162 0.58 -0.7 2,696,082 - DvMF_2162 0.65 -0.7 2,696,280 + DvMF_2162 0.79 -0.5 2,696,413 - DvMF_2162 0.88 -0.5 2,696,580 + -0.5 2,696,704 + -0.5 2,696,712 - -0.3 2,696,822 - -2.0 2,697,009 + -4.5 2,697,017 - -5.7 2,697,215 + DvMF_2163 0.15 -4.3 2,697,234 - DvMF_2163 0.16 -4.9 2,697,310 + DvMF_2163 0.18 -3.5 2,697,439 + DvMF_2163 0.22 -4.9 2,697,447 - DvMF_2163 0.23 -5.9 2,697,447 - DvMF_2163 0.23 -4.9 2,697,447 - DvMF_2163 0.23 -5.2 2,697,462 - DvMF_2163 0.23 -5.1 2,697,467 - DvMF_2163 0.23 -5.1 2,697,745 + DvMF_2163 0.32 -5.8 2,697,925 - DvMF_2163 0.37 -3.4 2,697,999 - DvMF_2163 0.40 -5.3 2,698,211 + DvMF_2163 0.46 -5.2 2,698,246 + DvMF_2163 0.47 -5.4 2,698,251 + DvMF_2163 0.47 -3.7 2,698,592 - DvMF_2163 0.58 -3.8 2,698,614 + DvMF_2163 0.59 -2.8 2,698,676 + DvMF_2163 0.61 -4.6 2,698,970 + DvMF_2163 0.70 -3.8 2,699,168 + DvMF_2163 0.76 -4.7 2,699,234 + DvMF_2163 0.78 -4.6 2,699,398 + DvMF_2163 0.83 -3.2 2,699,424 + DvMF_2163 0.84 -4.1 2,699,595 - DvMF_2163 0.89 -4.8 2,699,807 - -5.4 2,699,907 - -4.3 2,700,042 + +0.7 2,700,102 + DvMF_2164 0.10 -4.1 2,700,224 + DvMF_2164 0.20 -4.9 2,700,224 + DvMF_2164 0.20 -2.5 2,700,232 - DvMF_2164 0.21 -4.6 2,700,255 + DvMF_2164 0.23 -4.2 2,700,262 + DvMF_2164 0.23 -4.8 2,700,340 + DvMF_2164 0.30 -4.2 2,700,410 + DvMF_2164 0.36 -4.2 2,700,430 - DvMF_2164 0.37 -3.2 2,700,519 - DvMF_2164 0.45 -4.8 2,700,596 - DvMF_2164 0.51 -3.5 2,700,800 - DvMF_2164 0.68 -4.7 2,700,893 + DvMF_2164 0.75 -3.9 2,700,901 - DvMF_2164 0.76 -4.7 2,700,901 - DvMF_2164 0.76 -4.6
Or see this region's nucleotide sequence