Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2038

Experiment: MoYLS4 with Cephalothin 0.625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nthisS and aspS are separated by 118 nucleotidesaspS and DvMF_2039 are separated by 151 nucleotidesDvMF_2039 and DvMF_2040 are separated by 1 nucleotides DvMF_2037: hisS - histidyl-tRNA synthetase (RefSeq), at 2,526,655 to 2,527,935 hisS DvMF_2038: aspS - aspartyl-tRNA(Asp/Asn) synthetase (EC 6.1.1.23) (from data), at 2,528,054 to 2,529,898 aspS DvMF_2039: DvMF_2039 - peptide deformylase (RefSeq), at 2,530,050 to 2,530,604 _2039 DvMF_2040: DvMF_2040 - methionyl-tRNA formyltransferase (RefSeq), at 2,530,606 to 2,531,715 _2040 Position (kb) 2528 2529 2530Strain fitness (log2 ratio) -1 0 1at 2527.896 kb on + strandat 2527.975 kb on + strandat 2529.892 kb on + strandat 2529.892 kb on + strandat 2529.899 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Cephalothin 0.625 mg/ml
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2,527,896 + -0.1
2,527,975 + -0.3
2,529,892 + -0.8
2,529,892 + -0.8
2,529,899 + -0.7

Or see this region's nucleotide sequence