Experiment: MoYLS4 with Cephalothin 0.625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1753 and DvMF_1754 are separated by 140 nucleotides DvMF_1754 and DvMF_1755 are separated by 434 nucleotides
DvMF_1753: DvMF_1753 - hypothetical protein (RefSeq), at 2,141,275 to 2,141,832
_1753
DvMF_1754: DvMF_1754 - diguanylate phosphodiesterase (RefSeq), at 2,141,973 to 2,143,268
_1754
DvMF_1755: DvMF_1755 - phosphoesterase RecJ domain protein (RefSeq), at 2,143,703 to 2,144,965
_1755
Position (kb)
2141
2142
2143
2144 Strain fitness (log2 ratio)
-1
0
1 at 2141.194 kb on + strand at 2141.277 kb on + strand at 2141.285 kb on - strand at 2141.295 kb on - strand at 2141.295 kb on - strand at 2141.338 kb on + strand, within DvMF_1753 at 2141.393 kb on + strand, within DvMF_1753 at 2141.408 kb on + strand, within DvMF_1753 at 2141.500 kb on + strand, within DvMF_1753 at 2141.500 kb on + strand, within DvMF_1753 at 2141.500 kb on + strand, within DvMF_1753 at 2141.500 kb on + strand, within DvMF_1753 at 2141.508 kb on - strand, within DvMF_1753 at 2141.768 kb on - strand, within DvMF_1753 at 2142.337 kb on + strand, within DvMF_1754 at 2142.346 kb on + strand, within DvMF_1754 at 2142.871 kb on - strand, within DvMF_1754 at 2142.891 kb on + strand, within DvMF_1754 at 2142.899 kb on - strand, within DvMF_1754 at 2142.902 kb on + strand, within DvMF_1754 at 2142.983 kb on - strand, within DvMF_1754 at 2143.021 kb on - strand, within DvMF_1754 at 2143.297 kb on + strand at 2143.305 kb on - strand at 2143.312 kb on + strand at 2143.335 kb on + strand at 2143.532 kb on - strand at 2143.544 kb on + strand at 2143.574 kb on + strand at 2143.576 kb on - strand at 2143.809 kb on + strand at 2144.059 kb on - strand, within DvMF_1755
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Cephalothin 0.625 mg/ml remove 2,141,194 + -0.7 2,141,277 + -0.7 2,141,285 - -1.2 2,141,295 - -0.4 2,141,295 - +0.1 2,141,338 + DvMF_1753 0.11 -0.6 2,141,393 + DvMF_1753 0.21 -0.4 2,141,408 + DvMF_1753 0.24 +0.1 2,141,500 + DvMF_1753 0.40 -0.3 2,141,500 + DvMF_1753 0.40 -0.9 2,141,500 + DvMF_1753 0.40 -0.3 2,141,500 + DvMF_1753 0.40 -0.2 2,141,508 - DvMF_1753 0.42 -0.5 2,141,768 - DvMF_1753 0.88 +0.7 2,142,337 + DvMF_1754 0.28 -0.5 2,142,346 + DvMF_1754 0.29 -0.2 2,142,871 - DvMF_1754 0.69 -1.0 2,142,891 + DvMF_1754 0.71 -0.3 2,142,899 - DvMF_1754 0.71 -0.6 2,142,902 + DvMF_1754 0.72 -0.8 2,142,983 - DvMF_1754 0.78 -0.5 2,143,021 - DvMF_1754 0.81 -0.5 2,143,297 + -0.9 2,143,305 - -0.4 2,143,312 + -0.2 2,143,335 + -0.6 2,143,532 - -0.2 2,143,544 + -0.2 2,143,574 + -0.3 2,143,576 - -0.7 2,143,809 + -0.3 2,144,059 - DvMF_1755 0.28 +0.0
Or see this region's nucleotide sequence