Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1587

Experiment: MoYLS4 with Cephalothin 0.625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1586 and DvMF_1587 are separated by 169 nucleotidesDvMF_1587 and DvMF_1588 are separated by 1 nucleotides DvMF_1586: DvMF_1586 - extracellular solute-binding protein family 1 (RefSeq), at 1,954,748 to 1,955,749 _1586 DvMF_1587: DvMF_1587 - ABC transporter related (RefSeq), at 1,955,919 to 1,957,019 _1587 DvMF_1588: DvMF_1588 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 1,957,021 to 1,958,712 _1588 Position (kb) 1955 1956 1957 1958Strain fitness (log2 ratio) -1 0 1at 1955.458 kb on - strand, within DvMF_1586at 1955.500 kb on + strand, within DvMF_1586at 1955.508 kb on - strand, within DvMF_1586at 1955.562 kb on - strand, within DvMF_1586at 1955.918 kb on - strandat 1955.926 kb on + strandat 1955.933 kb on - strandat 1955.934 kb on - strandat 1955.951 kb on + strandat 1955.980 kb on + strandat 1956.056 kb on - strand, within DvMF_1587at 1956.171 kb on - strand, within DvMF_1587at 1956.270 kb on + strand, within DvMF_1587at 1956.270 kb on + strand, within DvMF_1587at 1956.490 kb on + strand, within DvMF_1587at 1956.850 kb on + strand, within DvMF_1587at 1956.933 kb on + strandat 1957.171 kb on - strandat 1957.359 kb on + strand, within DvMF_1588at 1957.564 kb on - strand, within DvMF_1588at 1957.801 kb on - strand, within DvMF_1588

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Cephalothin 0.625 mg/ml
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1,955,458 - DvMF_1586 0.71 -0.7
1,955,500 + DvMF_1586 0.75 -0.5
1,955,508 - DvMF_1586 0.76 -0.5
1,955,562 - DvMF_1586 0.81 +1.5
1,955,918 - -1.0
1,955,926 + -0.2
1,955,933 - -0.3
1,955,934 - -0.5
1,955,951 + -0.7
1,955,980 + -0.2
1,956,056 - DvMF_1587 0.12 -0.1
1,956,171 - DvMF_1587 0.23 -1.3
1,956,270 + DvMF_1587 0.32 -0.2
1,956,270 + DvMF_1587 0.32 -0.2
1,956,490 + DvMF_1587 0.52 -0.3
1,956,850 + DvMF_1587 0.85 -0.5
1,956,933 + -0.3
1,957,171 - -0.4
1,957,359 + DvMF_1588 0.20 -0.7
1,957,564 - DvMF_1588 0.32 +0.0
1,957,801 - DvMF_1588 0.46 +0.3

Or see this region's nucleotide sequence