Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5410

Experiment: Nalidixic 0.004 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nalidixic 0.004 mg/ml
6,213,901	-		Pf6N2E2_5409	0.40	-1.5
6,213,901	-		Pf6N2E2_5409	0.40	-0.8
6,213,901	-		Pf6N2E2_5409	0.40	-0.1
6,214,128	+		Pf6N2E2_5409	0.57	-1.1
6,214,128	+		Pf6N2E2_5409	0.57	-0.3
6,214,128	+		Pf6N2E2_5409	0.57	-0.3
6,214,128	+		Pf6N2E2_5409	0.57	-0.2
6,214,128	+		Pf6N2E2_5409	0.57	+0.9
6,214,128	+		Pf6N2E2_5409	0.57	+0.9
6,214,128	+		Pf6N2E2_5409	0.57	-0.1
6,214,128	+		Pf6N2E2_5409	0.57	+1.2
6,214,128	+		Pf6N2E2_5409	0.57	-0.6
6,214,129	-		Pf6N2E2_5409	0.57	-0.2
6,214,129	-		Pf6N2E2_5409	0.57	+0.4
6,214,129	-		Pf6N2E2_5409	0.57	-0.7
6,214,129	-		Pf6N2E2_5409	0.57	-0.2
6,214,129	-		Pf6N2E2_5409	0.57	+0.9
6,214,129	-		Pf6N2E2_5409	0.57	-0.5
6,214,129	-		Pf6N2E2_5409	0.57	+0.4
6,214,155	+		Pf6N2E2_5409	0.59	+0.4
6,214,359	+		Pf6N2E2_5409	0.75	-0.6
6,214,359	+		Pf6N2E2_5409	0.75	+0.8
6,214,360	-		Pf6N2E2_5409	0.75	+0.8
6,214,360	-		Pf6N2E2_5409	0.75	-0.3
6,214,511	+		Pf6N2E2_5409	0.86	+0.5
6,214,511	+		Pf6N2E2_5409	0.86	-0.5
6,214,511	+		Pf6N2E2_5409	0.86	-0.5
6,214,511	+		Pf6N2E2_5409	0.86	-0.3
6,214,511	+		Pf6N2E2_5409	0.86	-0.7
6,214,511	+		Pf6N2E2_5409	0.86	+0.3
6,214,511	+		Pf6N2E2_5409	0.86	+0.8
6,214,511	+		Pf6N2E2_5409	0.86	-0.7
6,214,512	-		Pf6N2E2_5409	0.86	-0.4
6,214,512	-		Pf6N2E2_5409	0.86	-0.8
6,214,512	-		Pf6N2E2_5409	0.86	+0.7
6,214,512	-		Pf6N2E2_5409	0.86	+0.4
6,214,512	-		Pf6N2E2_5409	0.86	+0.3
6,214,512	-		Pf6N2E2_5409	0.86	+0.1
6,214,648	-				+0.1
6,214,648	-				+0.4
6,214,713	+				-1.0
6,214,713	+				-0.7
6,214,714	-				-3.7
6,214,714	-				+0.9
6,214,749	+				-0.9
6,214,812	+				-1.6
6,214,813	-				-0.4
6,214,857	+		Pf6N2E2_5410	0.17	+0.3
6,214,857	+		Pf6N2E2_5410	0.17	-0.1
6,214,857	+		Pf6N2E2_5410	0.17	+0.2
6,214,857	+		Pf6N2E2_5410	0.17	+0.0
6,214,857	+		Pf6N2E2_5410	0.17	-0.1
6,215,022	+		Pf6N2E2_5410	0.52	+2.3
6,215,022	+		Pf6N2E2_5410	0.52	-0.9
6,215,022	+		Pf6N2E2_5410	0.52	+0.5
6,215,022	+		Pf6N2E2_5410	0.52	-0.9
6,215,022	+		Pf6N2E2_5410	0.52	+0.8
6,215,022	+		Pf6N2E2_5410	0.52	-1.0
6,215,022	+		Pf6N2E2_5410	0.52	+0.1
6,215,023	-		Pf6N2E2_5410	0.52	+0.2
6,215,023	-		Pf6N2E2_5410	0.52	-0.6
6,215,023	-		Pf6N2E2_5410	0.52	+0.8
6,215,023	-		Pf6N2E2_5410	0.52	+0.7
6,215,060	+		Pf6N2E2_5410	0.60	+1.2
6,215,061	-		Pf6N2E2_5410	0.61	+1.7
6,215,185	+		Pf6N2E2_5410	0.87	+0.1
6,215,185	+		Pf6N2E2_5410	0.87	+0.7
6,215,185	+		Pf6N2E2_5410	0.87	+0.4
6,215,186	-		Pf6N2E2_5410	0.87	+0.9
6,215,186	-		Pf6N2E2_5410	0.87	+0.6
6,215,190	-		Pf6N2E2_5410	0.88	-0.6
6,215,190	-		Pf6N2E2_5410	0.88	-0.4
6,215,190	-		Pf6N2E2_5410	0.88	+0.2
6,215,247	+				+0.1
6,215,285	+				-1.2
6,215,285	+				+0.1
6,215,285	+				-2.7
6,215,285	+				+1.0
6,215,285	+				-2.6
6,215,286	-				+1.7
6,215,286	-				-1.4
6,215,286	-				-2.5
6,215,286	-				+0.9
6,215,359	+		Pf6N2E2_5411	0.22	-0.7
6,215,389	+		Pf6N2E2_5411	0.31	-1.5
6,215,390	-		Pf6N2E2_5411	0.32	-0.9
6,215,488	+		Pf6N2E2_5411	0.62	+0.1
6,215,488	+		Pf6N2E2_5411	0.62	-0.1
6,215,489	-		Pf6N2E2_5411	0.62	-0.4
6,215,489	-		Pf6N2E2_5411	0.62	+0.6
6,215,612	-				+0.3
6,215,612	-				+1.2
6,215,653	+				-0.4
6,215,654	-				-0.4
6,215,661	-				+0.4
6,215,714	+				-0.7
6,215,719	+				-0.2
6,215,719	+				+0.8
6,215,720	-				-0.5
6,215,720	-				+0.1
6,215,872	+		Pf6N2E2_5412	0.19	-1.5
6,215,876	+		Pf6N2E2_5412	0.20	-0.2
6,215,876	+		Pf6N2E2_5412	0.20	-0.1
6,215,876	+		Pf6N2E2_5412	0.20	+0.0
6,215,876	+		Pf6N2E2_5412	0.20	+0.5
6,215,877	-		Pf6N2E2_5412	0.20	+0.1
6,215,877	-		Pf6N2E2_5412	0.20	+1.4
6,215,877	-		Pf6N2E2_5412	0.20	+0.6
6,215,877	-		Pf6N2E2_5412	0.20	+0.9