Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4191

Experiment: Nalidixic 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4190 and Pf6N2E2_4191 are separated by 10 nucleotidesPf6N2E2_4191 and Pf6N2E2_4192 are separated by 80 nucleotides Pf6N2E2_4190 - Glycyl-tRNA synthetase beta chain (EC 6.1.1.14), at 4,874,822 to 4,876,873 _4190 Pf6N2E2_4191 - D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase (EC 3.1.1.-); Histidinol-phosphatase (EC 3.1.3.15), at 4,876,884 to 4,877,417 _4191 Pf6N2E2_4192 - 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51), at 4,877,498 to 4,878,277 _4192 Position (kb) 4876 4877 4878Strain fitness (log2 ratio) -2 -1 0 1at 4877.415 kb on + strandat 4877.415 kb on + strandat 4877.497 kb on + strandat 4877.497 kb on + strandat 4877.633 kb on + strandat 4878.138 kb on - strandat 4878.389 kb on - strandat 4878.389 kb on - strandat 4878.389 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nalidixic 0.004 mg/ml
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4,877,415 + +0.2
4,877,415 + -0.7
4,877,497 + -0.5
4,877,497 + -2.4
4,877,633 + +1.5
4,878,138 - +0.1
4,878,389 - -1.1
4,878,389 - -0.9
4,878,389 - +0.2

Or see this region's nucleotide sequence