Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2332

Experiment: Nalidixic 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_2331 and Pf6N2E2_2332 are separated by 233 nucleotidesPf6N2E2_2332 and Pf6N2E2_2333 are separated by 135 nucleotides Pf6N2E2_2331 - FIG00954563: hypothetical protein, at 2,756,910 to 2,758,070 _2331 Pf6N2E2_2332 - DNA ligase (EC 6.5.1.2), at 2,758,304 to 2,760,661 _2332 Pf6N2E2_2333 - Cell division protein ZipA, at 2,760,797 to 2,761,642 _2333 Position (kb) 2758 2759 2760 2761Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2757.314 kb on - strand, within Pf6N2E2_2331at 2757.338 kb on - strand, within Pf6N2E2_2331at 2757.412 kb on + strand, within Pf6N2E2_2331at 2757.412 kb on + strand, within Pf6N2E2_2331at 2757.412 kb on + strand, within Pf6N2E2_2331at 2757.413 kb on - strand, within Pf6N2E2_2331at 2757.413 kb on - strand, within Pf6N2E2_2331at 2757.415 kb on + strand, within Pf6N2E2_2331at 2757.415 kb on + strand, within Pf6N2E2_2331at 2757.415 kb on + strand, within Pf6N2E2_2331at 2757.416 kb on - strand, within Pf6N2E2_2331at 2757.416 kb on - strand, within Pf6N2E2_2331at 2757.416 kb on - strand, within Pf6N2E2_2331at 2757.484 kb on + strand, within Pf6N2E2_2331at 2757.484 kb on + strand, within Pf6N2E2_2331at 2757.602 kb on + strand, within Pf6N2E2_2331at 2757.645 kb on - strand, within Pf6N2E2_2331at 2757.645 kb on - strand, within Pf6N2E2_2331at 2757.791 kb on + strand, within Pf6N2E2_2331at 2757.791 kb on + strand, within Pf6N2E2_2331at 2758.004 kb on + strandat 2758.005 kb on - strandat 2758.099 kb on + strandat 2758.100 kb on - strandat 2758.111 kb on + strandat 2758.141 kb on + strandat 2758.142 kb on - strandat 2758.245 kb on + strandat 2758.245 kb on + strandat 2758.306 kb on - strandat 2760.694 kb on - strandat 2760.715 kb on - strandat 2760.715 kb on - strandat 2760.715 kb on - strandat 2760.715 kb on - strandat 2760.715 kb on - strandat 2760.715 kb on - strandat 2760.715 kb on - strandat 2760.715 kb on - strandat 2760.715 kb on - strandat 2760.719 kb on - strandat 2760.719 kb on - strandat 2760.719 kb on - strandat 2760.719 kb on - strandat 2760.765 kb on - strandat 2760.765 kb on - strandat 2760.765 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nalidixic 0.004 mg/ml
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2,757,314 - Pf6N2E2_2331 0.35 -0.2
2,757,338 - Pf6N2E2_2331 0.37 +3.5
2,757,412 + Pf6N2E2_2331 0.43 -0.3
2,757,412 + Pf6N2E2_2331 0.43 +0.1
2,757,412 + Pf6N2E2_2331 0.43 -1.0
2,757,413 - Pf6N2E2_2331 0.43 -0.7
2,757,413 - Pf6N2E2_2331 0.43 +1.6
2,757,415 + Pf6N2E2_2331 0.43 +0.9
2,757,415 + Pf6N2E2_2331 0.43 -1.8
2,757,415 + Pf6N2E2_2331 0.43 -0.3
2,757,416 - Pf6N2E2_2331 0.44 -2.4
2,757,416 - Pf6N2E2_2331 0.44 +0.4
2,757,416 - Pf6N2E2_2331 0.44 -0.8
2,757,484 + Pf6N2E2_2331 0.49 +1.3
2,757,484 + Pf6N2E2_2331 0.49 +0.9
2,757,602 + Pf6N2E2_2331 0.60 +1.1
2,757,645 - Pf6N2E2_2331 0.63 +0.8
2,757,645 - Pf6N2E2_2331 0.63 -0.0
2,757,791 + Pf6N2E2_2331 0.76 +0.9
2,757,791 + Pf6N2E2_2331 0.76 +0.5
2,758,004 + +0.4
2,758,005 - +0.6
2,758,099 + +0.2
2,758,100 - -1.1
2,758,111 + -1.5
2,758,141 + +0.1
2,758,142 - -0.3
2,758,245 + +1.1
2,758,245 + +1.8
2,758,306 - -0.4
2,760,694 - +0.3
2,760,715 - +2.4
2,760,715 - -0.2
2,760,715 - +0.4
2,760,715 - -3.1
2,760,715 - +1.9
2,760,715 - +0.3
2,760,715 - +0.8
2,760,715 - +0.3
2,760,715 - +1.9
2,760,719 - +0.7
2,760,719 - +0.5
2,760,719 - -0.8
2,760,719 - +1.0
2,760,765 - +1.7
2,760,765 - +0.5
2,760,765 - +0.0

Or see this region's nucleotide sequence