Experiment: Nalidixic 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_1996 and Pf6N2E2_1997 are separated by 446 nucleotides Pf6N2E2_1997 and Pf6N2E2_1998 overlap by 4 nucleotides
Pf6N2E2_1996 - DNA repair protein RadC, at 2,362,378 to 2,362,872
_1996
Pf6N2E2_1997 - FIG00956406: hypothetical protein, at 2,363,319 to 2,363,993
_1997
Pf6N2E2_1998 - FIG01212208: hypothetical protein, at 2,363,990 to 2,365,396
_1998
Position (kb)
2363
2364 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2362.432 kb on - strand, within Pf6N2E2_1996 at 2362.482 kb on + strand, within Pf6N2E2_1996 at 2362.482 kb on + strand, within Pf6N2E2_1996 at 2362.482 kb on + strand, within Pf6N2E2_1996 at 2362.482 kb on + strand, within Pf6N2E2_1996 at 2362.482 kb on + strand, within Pf6N2E2_1996 at 2362.482 kb on + strand, within Pf6N2E2_1996 at 2362.483 kb on - strand, within Pf6N2E2_1996 at 2362.483 kb on - strand, within Pf6N2E2_1996 at 2362.483 kb on - strand, within Pf6N2E2_1996 at 2362.501 kb on + strand, within Pf6N2E2_1996 at 2362.535 kb on + strand, within Pf6N2E2_1996 at 2362.536 kb on - strand, within Pf6N2E2_1996 at 2362.612 kb on + strand, within Pf6N2E2_1996 at 2362.689 kb on + strand, within Pf6N2E2_1996 at 2362.717 kb on - strand, within Pf6N2E2_1996 at 2362.945 kb on - strand at 2362.952 kb on - strand at 2362.952 kb on - strand at 2363.046 kb on + strand at 2363.191 kb on - strand at 2363.250 kb on + strand at 2363.251 kb on - strand at 2363.251 kb on - strand at 2363.278 kb on - strand at 2363.414 kb on - strand, within Pf6N2E2_1997 at 2363.466 kb on + strand, within Pf6N2E2_1997 at 2363.466 kb on + strand, within Pf6N2E2_1997 at 2363.539 kb on - strand, within Pf6N2E2_1997 at 2363.539 kb on - strand, within Pf6N2E2_1997 at 2363.865 kb on - strand, within Pf6N2E2_1997 at 2364.150 kb on - strand, within Pf6N2E2_1998 at 2364.348 kb on + strand, within Pf6N2E2_1998 at 2364.348 kb on + strand, within Pf6N2E2_1998 at 2364.402 kb on + strand, within Pf6N2E2_1998 at 2364.402 kb on + strand, within Pf6N2E2_1998 at 2364.403 kb on - strand, within Pf6N2E2_1998 at 2364.487 kb on + strand, within Pf6N2E2_1998 at 2364.762 kb on + strand, within Pf6N2E2_1998 at 2364.763 kb on - strand, within Pf6N2E2_1998 at 2364.909 kb on - strand, within Pf6N2E2_1998 at 2364.909 kb on - strand, within Pf6N2E2_1998
Per-strain Table
Position Strand Gene LocusTag Fraction Nalidixic 0.004 mg/ml remove 2,362,432 - Pf6N2E2_1996 0.11 -0.5 2,362,482 + Pf6N2E2_1996 0.21 -0.7 2,362,482 + Pf6N2E2_1996 0.21 -0.3 2,362,482 + Pf6N2E2_1996 0.21 +0.5 2,362,482 + Pf6N2E2_1996 0.21 -1.1 2,362,482 + Pf6N2E2_1996 0.21 +0.3 2,362,482 + Pf6N2E2_1996 0.21 -1.7 2,362,483 - Pf6N2E2_1996 0.21 +0.8 2,362,483 - Pf6N2E2_1996 0.21 +1.8 2,362,483 - Pf6N2E2_1996 0.21 +0.3 2,362,501 + Pf6N2E2_1996 0.25 -0.1 2,362,535 + Pf6N2E2_1996 0.32 -0.6 2,362,536 - Pf6N2E2_1996 0.32 -0.2 2,362,612 + Pf6N2E2_1996 0.47 +0.6 2,362,689 + Pf6N2E2_1996 0.63 -0.7 2,362,717 - Pf6N2E2_1996 0.68 +1.6 2,362,945 - -0.3 2,362,952 - -1.8 2,362,952 - -0.5 2,363,046 + -1.3 2,363,191 - +0.6 2,363,250 + +0.4 2,363,251 - -0.3 2,363,251 - -0.2 2,363,278 - -0.9 2,363,414 - Pf6N2E2_1997 0.14 +0.6 2,363,466 + Pf6N2E2_1997 0.22 -1.5 2,363,466 + Pf6N2E2_1997 0.22 -1.0 2,363,539 - Pf6N2E2_1997 0.33 -0.6 2,363,539 - Pf6N2E2_1997 0.33 -2.3 2,363,865 - Pf6N2E2_1997 0.81 -1.1 2,364,150 - Pf6N2E2_1998 0.11 +0.3 2,364,348 + Pf6N2E2_1998 0.25 +0.3 2,364,348 + Pf6N2E2_1998 0.25 +1.0 2,364,402 + Pf6N2E2_1998 0.29 +0.4 2,364,402 + Pf6N2E2_1998 0.29 -1.3 2,364,403 - Pf6N2E2_1998 0.29 +0.1 2,364,487 + Pf6N2E2_1998 0.35 +0.7 2,364,762 + Pf6N2E2_1998 0.55 -0.3 2,364,763 - Pf6N2E2_1998 0.55 +0.0 2,364,909 - Pf6N2E2_1998 0.65 +0.2 2,364,909 - Pf6N2E2_1998 0.65 -0.6
Or see this region's nucleotide sequence