Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1997

Experiment: Nalidixic 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_1996 and Pf6N2E2_1997 are separated by 446 nucleotidesPf6N2E2_1997 and Pf6N2E2_1998 overlap by 4 nucleotides Pf6N2E2_1996 - DNA repair protein RadC, at 2,362,378 to 2,362,872 _1996 Pf6N2E2_1997 - FIG00956406: hypothetical protein, at 2,363,319 to 2,363,993 _1997 Pf6N2E2_1998 - FIG01212208: hypothetical protein, at 2,363,990 to 2,365,396 _1998 Position (kb) 2363 2364Strain fitness (log2 ratio) -2 -1 0 1 2at 2362.432 kb on - strand, within Pf6N2E2_1996at 2362.482 kb on + strand, within Pf6N2E2_1996at 2362.482 kb on + strand, within Pf6N2E2_1996at 2362.482 kb on + strand, within Pf6N2E2_1996at 2362.482 kb on + strand, within Pf6N2E2_1996at 2362.482 kb on + strand, within Pf6N2E2_1996at 2362.482 kb on + strand, within Pf6N2E2_1996at 2362.483 kb on - strand, within Pf6N2E2_1996at 2362.483 kb on - strand, within Pf6N2E2_1996at 2362.483 kb on - strand, within Pf6N2E2_1996at 2362.501 kb on + strand, within Pf6N2E2_1996at 2362.535 kb on + strand, within Pf6N2E2_1996at 2362.536 kb on - strand, within Pf6N2E2_1996at 2362.612 kb on + strand, within Pf6N2E2_1996at 2362.689 kb on + strand, within Pf6N2E2_1996at 2362.717 kb on - strand, within Pf6N2E2_1996at 2362.945 kb on - strandat 2362.952 kb on - strandat 2362.952 kb on - strandat 2363.046 kb on + strandat 2363.191 kb on - strandat 2363.250 kb on + strandat 2363.251 kb on - strandat 2363.251 kb on - strandat 2363.278 kb on - strandat 2363.414 kb on - strand, within Pf6N2E2_1997at 2363.466 kb on + strand, within Pf6N2E2_1997at 2363.466 kb on + strand, within Pf6N2E2_1997at 2363.539 kb on - strand, within Pf6N2E2_1997at 2363.539 kb on - strand, within Pf6N2E2_1997at 2363.865 kb on - strand, within Pf6N2E2_1997at 2364.150 kb on - strand, within Pf6N2E2_1998at 2364.348 kb on + strand, within Pf6N2E2_1998at 2364.348 kb on + strand, within Pf6N2E2_1998at 2364.402 kb on + strand, within Pf6N2E2_1998at 2364.402 kb on + strand, within Pf6N2E2_1998at 2364.403 kb on - strand, within Pf6N2E2_1998at 2364.487 kb on + strand, within Pf6N2E2_1998at 2364.762 kb on + strand, within Pf6N2E2_1998at 2364.763 kb on - strand, within Pf6N2E2_1998at 2364.909 kb on - strand, within Pf6N2E2_1998at 2364.909 kb on - strand, within Pf6N2E2_1998

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Per-strain Table

Position Strand Gene LocusTag Fraction Nalidixic 0.004 mg/ml
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2,362,432 - Pf6N2E2_1996 0.11 -0.5
2,362,482 + Pf6N2E2_1996 0.21 -0.7
2,362,482 + Pf6N2E2_1996 0.21 -0.3
2,362,482 + Pf6N2E2_1996 0.21 +0.5
2,362,482 + Pf6N2E2_1996 0.21 -1.1
2,362,482 + Pf6N2E2_1996 0.21 +0.3
2,362,482 + Pf6N2E2_1996 0.21 -1.7
2,362,483 - Pf6N2E2_1996 0.21 +0.8
2,362,483 - Pf6N2E2_1996 0.21 +1.8
2,362,483 - Pf6N2E2_1996 0.21 +0.3
2,362,501 + Pf6N2E2_1996 0.25 -0.1
2,362,535 + Pf6N2E2_1996 0.32 -0.6
2,362,536 - Pf6N2E2_1996 0.32 -0.2
2,362,612 + Pf6N2E2_1996 0.47 +0.6
2,362,689 + Pf6N2E2_1996 0.63 -0.7
2,362,717 - Pf6N2E2_1996 0.68 +1.6
2,362,945 - -0.3
2,362,952 - -1.8
2,362,952 - -0.5
2,363,046 + -1.3
2,363,191 - +0.6
2,363,250 + +0.4
2,363,251 - -0.3
2,363,251 - -0.2
2,363,278 - -0.9
2,363,414 - Pf6N2E2_1997 0.14 +0.6
2,363,466 + Pf6N2E2_1997 0.22 -1.5
2,363,466 + Pf6N2E2_1997 0.22 -1.0
2,363,539 - Pf6N2E2_1997 0.33 -0.6
2,363,539 - Pf6N2E2_1997 0.33 -2.3
2,363,865 - Pf6N2E2_1997 0.81 -1.1
2,364,150 - Pf6N2E2_1998 0.11 +0.3
2,364,348 + Pf6N2E2_1998 0.25 +0.3
2,364,348 + Pf6N2E2_1998 0.25 +1.0
2,364,402 + Pf6N2E2_1998 0.29 +0.4
2,364,402 + Pf6N2E2_1998 0.29 -1.3
2,364,403 - Pf6N2E2_1998 0.29 +0.1
2,364,487 + Pf6N2E2_1998 0.35 +0.7
2,364,762 + Pf6N2E2_1998 0.55 -0.3
2,364,763 - Pf6N2E2_1998 0.55 +0.0
2,364,909 - Pf6N2E2_1998 0.65 +0.2
2,364,909 - Pf6N2E2_1998 0.65 -0.6

Or see this region's nucleotide sequence