Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1691

Experiment: Nalidixic 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_1690 and Pf6N2E2_1691 are separated by 566 nucleotidesPf6N2E2_1691 and Pf6N2E2_1692 are separated by 241 nucleotidesPf6N2E2_1692 and Pf6N2E2_1693 are separated by 16 nucleotides Pf6N2E2_1690 - Mobile element protein, at 1,999,357 to 2,000,526 _1690 Pf6N2E2_1691 - hypothetical protein, at 2,001,093 to 2,001,335 _1691 Pf6N2E2_1692 - transporter, LysE family, at 2,001,577 to 2,002,218 _1692 Pf6N2E2_1693 - hypothetical protein, at 2,002,235 to 2,002,354 _1693 Position (kb) 2001 2002Strain fitness (log2 ratio) -2 -1 0 1at 2000.619 kb on + strandat 2000.712 kb on - strandat 2000.712 kb on - strandat 2000.750 kb on - strandat 2000.969 kb on - strandat 2001.017 kb on + strandat 2001.088 kb on + strandat 2001.089 kb on - strandat 2001.094 kb on + strandat 2001.094 kb on + strandat 2001.094 kb on + strandat 2001.094 kb on + strandat 2001.094 kb on + strandat 2001.095 kb on - strandat 2001.125 kb on + strand, within Pf6N2E2_1691at 2001.126 kb on - strand, within Pf6N2E2_1691at 2001.158 kb on + strand, within Pf6N2E2_1691at 2001.202 kb on + strand, within Pf6N2E2_1691at 2001.348 kb on + strandat 2001.349 kb on - strandat 2001.351 kb on + strandat 2001.351 kb on + strandat 2001.351 kb on + strandat 2001.395 kb on - strandat 2001.512 kb on + strandat 2001.603 kb on + strandat 2001.924 kb on - strand, within Pf6N2E2_1692at 2001.924 kb on - strand, within Pf6N2E2_1692at 2001.924 kb on - strand, within Pf6N2E2_1692at 2001.925 kb on + strand, within Pf6N2E2_1692at 2001.926 kb on - strand, within Pf6N2E2_1692at 2002.084 kb on + strand, within Pf6N2E2_1692at 2002.085 kb on - strand, within Pf6N2E2_1692

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Per-strain Table

Position Strand Gene LocusTag Fraction Nalidixic 0.004 mg/ml
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2,000,619 + -0.0
2,000,712 - +0.1
2,000,712 - +0.2
2,000,750 - +0.6
2,000,969 - +0.6
2,001,017 + +0.4
2,001,088 + +0.8
2,001,089 - -0.2
2,001,094 + +0.6
2,001,094 + +0.7
2,001,094 + -0.9
2,001,094 + -0.1
2,001,094 + +0.5
2,001,095 - -1.1
2,001,125 + Pf6N2E2_1691 0.13 -0.5
2,001,126 - Pf6N2E2_1691 0.14 -2.6
2,001,158 + Pf6N2E2_1691 0.27 -2.0
2,001,202 + Pf6N2E2_1691 0.45 +1.4
2,001,348 + -0.1
2,001,349 - -1.3
2,001,351 + -0.9
2,001,351 + -0.2
2,001,351 + -0.6
2,001,395 - +1.0
2,001,512 + -1.5
2,001,603 + +0.7
2,001,924 - Pf6N2E2_1692 0.54 +1.2
2,001,924 - Pf6N2E2_1692 0.54 -0.5
2,001,924 - Pf6N2E2_1692 0.54 -0.2
2,001,925 + Pf6N2E2_1692 0.54 -0.9
2,001,926 - Pf6N2E2_1692 0.54 -1.8
2,002,084 + Pf6N2E2_1692 0.79 +1.7
2,002,085 - Pf6N2E2_1692 0.79 -1.4

Or see this region's nucleotide sequence