Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS28725

Experiment: Growth at pH9 and (C) Trisodium citrate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Growth at pH9 and (C) Trisodium citrate
6,388,913	-				+4.0
6,388,965	+				+1.4
6,388,965	+				+1.9
6,388,965	+				+0.2
6,388,965	+				-0.3
6,388,965	+				-0.8
6,388,965	+				+1.8
6,388,966	-				+3.9
6,388,966	-				+0.7
6,388,966	-				+2.3
6,388,966	-				-0.9
6,388,966	-				+0.1
6,388,966	-				-1.3
6,388,966	-				+0.3
6,388,966	-				+1.0
6,389,097	+		PFLU_RS28720	0.21	+2.1
6,389,118	+		PFLU_RS28720	0.24	-0.8
6,389,118	+		PFLU_RS28720	0.24	-2.0
6,389,118	+		PFLU_RS28720	0.24	+3.4
6,389,118	+		PFLU_RS28720	0.24	+1.9
6,389,118	+		PFLU_RS28720	0.24	+3.1
6,389,118	+		PFLU_RS28720	0.24	+2.4
6,389,118	+		PFLU_RS28720	0.24	-0.9
6,389,118	+		PFLU_RS28720	0.24	-0.6
6,389,118	+		PFLU_RS28720	0.24	+1.7
6,389,118	+		PFLU_RS28720	0.24	-0.1
6,389,118	+		PFLU_RS28720	0.24	-1.2
6,389,118	+		PFLU_RS28720	0.24	+0.1
6,389,118	+		PFLU_RS28720	0.24	-0.1
6,389,118	+		PFLU_RS28720	0.24	-0.3
6,389,118	+		PFLU_RS28720	0.24	+1.4
6,389,118	+		PFLU_RS28720	0.24	-1.1
6,389,118	+		PFLU_RS28720	0.24	-1.0
6,389,119	-		PFLU_RS28720	0.24	+1.5
6,389,119	-		PFLU_RS28720	0.24	+0.3
6,389,119	-		PFLU_RS28720	0.24	+0.6
6,389,119	-		PFLU_RS28720	0.24	-1.4
6,389,119	-		PFLU_RS28720	0.24	+1.5
6,389,119	-		PFLU_RS28720	0.24	+2.1
6,389,119	-		PFLU_RS28720	0.24	+0.6
6,389,119	-		PFLU_RS28720	0.24	+1.0
6,389,119	-		PFLU_RS28720	0.24	+1.9
6,389,119	-		PFLU_RS28720	0.24	+2.2
6,389,119	-		PFLU_RS28720	0.24	+0.7
6,389,166	+		PFLU_RS28720	0.32	-0.3
6,389,166	+		PFLU_RS28720	0.32	+4.3
6,389,166	+		PFLU_RS28720	0.32	+1.3
6,389,166	+		PFLU_RS28720	0.32	-1.3
6,389,166	+		PFLU_RS28720	0.32	+2.1
6,389,166	+		PFLU_RS28720	0.32	-0.1
6,389,167	-		PFLU_RS28720	0.32	+5.8
6,389,167	-		PFLU_RS28720	0.32	-1.6
6,389,167	-		PFLU_RS28720	0.32	+0.1
6,389,167	-		PFLU_RS28720	0.32	-0.5
6,389,226	+		PFLU_RS28720	0.41	+1.7
6,389,227	-		PFLU_RS28720	0.42	+1.3
6,389,329	+		PFLU_RS28720	0.58	-1.9
6,389,329	+		PFLU_RS28720	0.58	-1.3
6,389,329	+		PFLU_RS28720	0.58	+0.6
6,389,329	+		PFLU_RS28720	0.58	-0.2
6,389,329	+		PFLU_RS28720	0.58	+0.2
6,389,329	+		PFLU_RS28720	0.58	+1.0
6,389,329	+		PFLU_RS28720	0.58	+3.3
6,389,329	+		PFLU_RS28720	0.58	+0.6
6,389,330	-		PFLU_RS28720	0.58	+2.6
6,389,330	-		PFLU_RS28720	0.58	-0.8
6,389,330	-		PFLU_RS28720	0.58	+2.0
6,389,330	-		PFLU_RS28720	0.58	-1.2
6,389,330	-		PFLU_RS28720	0.58	-1.5
6,389,331	+		PFLU_RS28720	0.58	+0.3
6,389,331	+		PFLU_RS28720	0.58	+0.0
6,389,331	+		PFLU_RS28720	0.58	+1.4
6,389,331	+		PFLU_RS28720	0.58	+2.9
6,389,331	+		PFLU_RS28720	0.58	+0.8
6,389,331	+		PFLU_RS28720	0.58	+0.3
6,389,331	+		PFLU_RS28720	0.58	+1.0
6,389,331	+		PFLU_RS28720	0.58	+1.8
6,389,331	+		PFLU_RS28720	0.58	-0.1
6,389,331	+		PFLU_RS28720	0.58	+0.7
6,389,331	+		PFLU_RS28720	0.58	+1.9
6,389,331	+		PFLU_RS28720	0.58	-0.1
6,389,331	+		PFLU_RS28720	0.58	-0.4
6,389,331	+		PFLU_RS28720	0.58	+0.8
6,389,331	+		PFLU_RS28720	0.58	-1.1
6,389,331	+		PFLU_RS28720	0.58	+0.1
6,389,331	+		PFLU_RS28720	0.58	+0.3
6,389,331	+		PFLU_RS28720	0.58	+1.2
6,389,331	+		PFLU_RS28720	0.58	+1.4
6,389,331	+		PFLU_RS28720	0.58	-1.4
6,389,331	+		PFLU_RS28720	0.58	+2.5
6,389,331	+		PFLU_RS28720	0.58	+0.4
6,389,331	+		PFLU_RS28720	0.58	-0.6
6,389,331	+		PFLU_RS28720	0.58	+2.6
6,389,331	+		PFLU_RS28720	0.58	+0.1
6,389,331	+		PFLU_RS28720	0.58	+0.4
6,389,331	+		PFLU_RS28720	0.58	+1.0
6,389,331	+		PFLU_RS28720	0.58	-0.6
6,389,331	+		PFLU_RS28720	0.58	+1.2
6,389,331	+		PFLU_RS28720	0.58	+1.8
6,389,331	+		PFLU_RS28720	0.58	+0.6
6,389,331	+		PFLU_RS28720	0.58	+0.7
6,389,331	+		PFLU_RS28720	0.58	-1.7
6,389,331	+		PFLU_RS28720	0.58	-0.9
6,389,331	+		PFLU_RS28720	0.58	+1.9
6,389,331	+		PFLU_RS28720	0.58	+4.0
6,389,331	+		PFLU_RS28720	0.58	+0.4
6,389,331	+		PFLU_RS28720	0.58	-1.2
6,389,331	+		PFLU_RS28720	0.58	+1.8
6,389,331	+		PFLU_RS28720	0.58	+0.9
6,389,331	+		PFLU_RS28720	0.58	+0.0
6,389,331	+		PFLU_RS28720	0.58	+1.3
6,389,331	+		PFLU_RS28720	0.58	-0.1
6,389,331	+		PFLU_RS28720	0.58	+3.3
6,389,331	+		PFLU_RS28720	0.58	+2.5
6,389,331	+		PFLU_RS28720	0.58	+3.4
6,389,331	+		PFLU_RS28720	0.58	-0.6
6,389,331	+		PFLU_RS28720	0.58	+0.1
6,389,331	+		PFLU_RS28720	0.58	-0.2
6,389,331	+		PFLU_RS28720	0.58	-1.5
6,389,331	+		PFLU_RS28720	0.58	-1.1
6,389,331	+		PFLU_RS28720	0.58	+3.5
6,389,331	+		PFLU_RS28720	0.58	-1.8
6,389,331	+		PFLU_RS28720	0.58	-0.3
6,389,331	+		PFLU_RS28720	0.58	+1.2
6,389,331	+		PFLU_RS28720	0.58	+3.8
6,389,331	+		PFLU_RS28720	0.58	-1.4
6,389,331	+		PFLU_RS28720	0.58	+1.5
6,389,331	+		PFLU_RS28720	0.58	+0.6
6,389,331	+		PFLU_RS28720	0.58	+0.6
6,389,331	+		PFLU_RS28720	0.58	+2.8
6,389,331	+		PFLU_RS28720	0.58	+3.2
6,389,331	+		PFLU_RS28720	0.58	-1.2
6,389,331	+		PFLU_RS28720	0.58	+3.1
6,389,331	+		PFLU_RS28720	0.58	-1.5
6,389,332	-		PFLU_RS28720	0.58	+2.8
6,389,332	-		PFLU_RS28720	0.58	+2.7
6,389,332	-		PFLU_RS28720	0.58	+4.3
6,389,332	-		PFLU_RS28720	0.58	-0.9
6,389,332	-		PFLU_RS28720	0.58	-1.2
6,389,332	-		PFLU_RS28720	0.58	+1.9
6,389,332	-		PFLU_RS28720	0.58	+1.1
6,389,332	-		PFLU_RS28720	0.58	-2.1
6,389,332	-		PFLU_RS28720	0.58	+1.4
6,389,332	-		PFLU_RS28720	0.58	-1.4
6,389,332	-		PFLU_RS28720	0.58	+3.2
6,389,332	-		PFLU_RS28720	0.58	+0.9
6,389,332	-		PFLU_RS28720	0.58	-2.1
6,389,332	-		PFLU_RS28720	0.58	+1.6
6,389,332	-		PFLU_RS28720	0.58	-2.2
6,389,332	-		PFLU_RS28720	0.58	-1.4
6,389,332	-		PFLU_RS28720	0.58	+0.9
6,389,332	-		PFLU_RS28720	0.58	+0.3
6,389,332	-		PFLU_RS28720	0.58	-1.0
6,389,332	-		PFLU_RS28720	0.58	+2.3
6,389,332	-		PFLU_RS28720	0.58	-1.1
6,389,332	-		PFLU_RS28720	0.58	-0.4
6,389,332	-		PFLU_RS28720	0.58	-1.1
6,389,332	-		PFLU_RS28720	0.58	+0.7
6,389,332	-		PFLU_RS28720	0.58	+0.3
6,389,332	-		PFLU_RS28720	0.58	-1.6
6,389,332	-		PFLU_RS28720	0.58	-1.9
6,389,332	-		PFLU_RS28720	0.58	-0.4
6,389,332	-		PFLU_RS28720	0.58	+3.1
6,389,332	-		PFLU_RS28720	0.58	+0.4
6,389,332	-		PFLU_RS28720	0.58	-0.8
6,389,332	-		PFLU_RS28720	0.58	-0.7
6,389,332	-		PFLU_RS28720	0.58	-1.2
6,389,332	-		PFLU_RS28720	0.58	-1.4
6,389,332	-		PFLU_RS28720	0.58	-2.0
6,389,332	-		PFLU_RS28720	0.58	+1.0
6,389,332	-		PFLU_RS28720	0.58	-1.1
6,389,332	-		PFLU_RS28720	0.58	+0.7
6,389,332	-		PFLU_RS28720	0.58	+1.3
6,389,332	-		PFLU_RS28720	0.58	-0.2
6,389,332	-		PFLU_RS28720	0.58	+2.9
6,389,332	-		PFLU_RS28720	0.58	+1.7
6,389,332	-		PFLU_RS28720	0.58	-1.8
6,389,332	-		PFLU_RS28720	0.58	-0.9
6,389,332	-		PFLU_RS28720	0.58	-0.8
6,389,332	-		PFLU_RS28720	0.58	-2.2
6,389,332	-		PFLU_RS28720	0.58	-0.1
6,389,332	-		PFLU_RS28720	0.58	+0.9
6,389,332	-		PFLU_RS28720	0.58	-2.4
6,389,332	-		PFLU_RS28720	0.58	+1.7
6,389,332	-		PFLU_RS28720	0.58	-0.0
6,389,332	-		PFLU_RS28720	0.58	-0.3
6,389,332	-		PFLU_RS28720	0.58	+1.7
6,389,332	-		PFLU_RS28720	0.58	-0.8
6,389,332	-		PFLU_RS28720	0.58	-1.7
6,389,389	+		PFLU_RS28720	0.67	+1.6
6,389,389	+		PFLU_RS28720	0.67	+0.9
6,389,389	+		PFLU_RS28720	0.67	+1.3
6,389,390	-		PFLU_RS28720	0.67	+1.0
6,389,390	-		PFLU_RS28720	0.67	+2.3
6,389,461	+		PFLU_RS28720	0.79	+3.5
6,389,461	+		PFLU_RS28720	0.79	+0.1
6,389,462	-		PFLU_RS28720	0.79	-0.6
6,389,462	-		PFLU_RS28720	0.79	-0.2
6,389,502	-		PFLU_RS28720	0.85	-1.6
6,389,551	+				-1.7
6,389,551	+				+0.6
6,389,551	+				+2.4
6,389,551	+				-0.9
6,389,551	+				+2.9
6,389,551	+				-0.0
6,389,551	+				-2.2
6,389,551	+				-1.4
6,389,551	+				+0.7
6,389,551	+				-0.6
6,389,551	+				+2.0
6,389,551	+				+2.2
6,389,551	+				-0.8
6,389,552	-				+1.9
6,389,552	-				-0.8
6,389,552	-				-0.9
6,389,552	-				+1.3
6,389,552	-				-0.1
6,389,552	-				-1.4
6,389,552	-				-1.0
6,389,552	-				+0.9
6,389,552	-				-0.7
6,389,552	-				+2.5
6,389,552	-				+0.2
6,389,552	-				+3.1
6,389,552	-				-0.3
6,389,552	-				-0.3
6,389,552	-				-1.2
6,389,552	-				+0.2
6,389,552	-				-0.6
6,389,552	-				+3.1
6,389,552	-				+0.2
6,389,579	+				+1.2
6,389,579	+				-0.9
6,389,596	+				+2.7
6,389,596	+				+1.1
6,389,596	+				+4.9
6,389,596	+				-0.3
6,389,596	+				+1.7
6,389,596	+				-1.6
6,389,596	+				+0.4
6,389,596	+				-1.2
6,389,596	+				+2.6
6,389,596	+				-0.6
6,389,596	+				+1.3
6,389,597	-				-1.6
6,389,597	-				-0.9
6,389,597	-				+0.1
6,389,597	-				+0.3
6,389,597	-				-0.6
6,389,597	-				+0.6
6,389,597	-				+2.7
6,389,597	-				+0.3
6,389,597	-				+1.9
6,389,597	-				-1.0
6,389,597	-				+0.3
6,389,597	-				+0.1
6,389,597	-				+1.7
6,389,597	-				+1.8
6,389,599	+				+0.6
6,389,599	+				+2.6
6,389,599	+				+2.7
6,389,599	+				-1.4
6,389,599	+				-1.0
6,389,599	+				-0.2
6,389,600	-				+1.2
6,389,600	-				+2.5
6,389,600	-				-1.9
6,389,605	+				-1.2
6,389,605	+				-1.2
6,389,605	+				+0.3
6,389,605	+				+0.3
6,389,605	+				+1.0
6,389,605	+				+3.5
6,389,605	+				-2.2
6,389,605	+				-1.6
6,389,606	-				+2.2
6,389,606	-				-0.2
6,389,606	-				-0.8
6,389,606	-				-2.9
6,389,606	-				+0.6
6,389,643	+				+0.1
6,389,643	+				+0.0
6,389,643	+				-0.7
6,389,644	-				-1.9
6,389,644	-				-1.8
6,389,650	+				+2.9
6,389,650	+				-0.1
6,389,650	+				+0.2
6,389,650	+				+1.5
6,389,650	+				+1.3
6,389,650	+				+0.1
6,389,651	-				-0.8
6,389,651	-				-0.3
6,389,651	-				+0.8
6,389,665	+				+1.6
6,389,665	+				-0.6
6,389,666	-				-0.5
6,389,666	-				-1.0
6,389,686	-				-1.9
6,389,703	+				+2.7
6,389,703	+				+0.9
6,389,703	+				+0.1
6,389,704	-				-0.3
6,389,704	-				+1.2
6,389,800	+				-1.3
6,389,800	+				-1.6
6,389,800	+				+0.6
6,389,800	+				+0.6
6,389,800	+				-3.1
6,389,800	+				-2.5
6,389,800	+				-1.9
6,389,800	+				-3.7
6,389,800	+				+0.8
6,389,800	+				-0.7
6,389,800	+				-2.2
6,389,801	-				-0.4
6,389,801	-				-2.8
6,389,801	-				-1.4
6,389,801	-				-1.7
6,389,801	-				-0.4
6,389,801	-				-0.8
6,389,801	-				-1.6
6,389,801	-				-0.2
6,389,801	-				+0.9
6,389,801	-				+0.3
6,389,801	-				-2.7
6,389,877	+		PFLU_RS28725	0.20	-3.0
6,389,877	+		PFLU_RS28725	0.20	-2.2
6,389,877	+		PFLU_RS28725	0.20	-0.3
6,389,878	-		PFLU_RS28725	0.20	-1.4
6,389,878	-		PFLU_RS28725	0.20	-0.7
6,389,896	+		PFLU_RS28725	0.22	-3.0
6,389,896	+		PFLU_RS28725	0.22	-1.3
6,389,919	+		PFLU_RS28725	0.25	+2.7
6,389,919	+		PFLU_RS28725	0.25	-2.5
6,389,919	+		PFLU_RS28725	0.25	-2.4
6,389,919	+		PFLU_RS28725	0.25	-2.0
6,389,919	+		PFLU_RS28725	0.25	-2.6
6,389,919	+		PFLU_RS28725	0.25	-0.1
6,389,920	-		PFLU_RS28725	0.25	-1.3
6,389,920	-		PFLU_RS28725	0.25	+1.0
6,389,920	-		PFLU_RS28725	0.25	-0.6
6,389,920	-		PFLU_RS28725	0.25	-0.9
6,389,920	-		PFLU_RS28725	0.25	-2.1
6,389,920	-		PFLU_RS28725	0.25	-1.4
6,389,922	+		PFLU_RS28725	0.26	-0.9
6,389,922	+		PFLU_RS28725	0.26	-0.7
6,389,922	+		PFLU_RS28725	0.26	-1.2
6,389,922	+		PFLU_RS28725	0.26	-0.9
6,389,923	-		PFLU_RS28725	0.26	+0.3
6,389,923	-		PFLU_RS28725	0.26	-0.9
6,389,923	-		PFLU_RS28725	0.26	-2.6
6,389,923	-		PFLU_RS28725	0.26	-2.4
6,390,331	+		PFLU_RS28725	0.80	-2.2
6,390,331	+		PFLU_RS28725	0.80	-0.9
6,390,331	+		PFLU_RS28725	0.80	-2.0
6,390,331	+		PFLU_RS28725	0.80	-3.3
6,390,331	+		PFLU_RS28725	0.80	-1.1
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6,390,331	+		PFLU_RS28725	0.80	-2.5
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6,390,331	+		PFLU_RS28725	0.80	-3.0
6,390,331	+		PFLU_RS28725	0.80	-2.1
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6,390,331	+		PFLU_RS28725	0.80	-3.2
6,390,331	+		PFLU_RS28725	0.80	-2.1
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6,391,380	+				-0.1
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6,391,381	-				-2.1
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