Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS17005

Experiment: Growth at pH9 and (C) Trisodium citrate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Growth at pH9 and (C) Trisodium citrate
3,854,857	+		PFLU_RS17000	0.19	+1.0
3,854,893	+		PFLU_RS17000	0.22	+1.0
3,854,893	+		PFLU_RS17000	0.22	+0.9
3,854,910	+		PFLU_RS17000	0.23	-0.8
3,854,911	-		PFLU_RS17000	0.23	-0.8
3,854,911	-		PFLU_RS17000	0.23	-1.5
3,854,915	-		PFLU_RS17000	0.24	-1.8
3,854,930	+		PFLU_RS17000	0.25	-1.6
3,854,930	+		PFLU_RS17000	0.25	-0.5
3,854,931	-		PFLU_RS17000	0.25	-0.1
3,854,931	-		PFLU_RS17000	0.25	-0.5
3,854,948	+		PFLU_RS17000	0.27	-0.4
3,854,994	+		PFLU_RS17000	0.30	+0.2
3,854,995	-		PFLU_RS17000	0.30	-1.6
3,854,995	-		PFLU_RS17000	0.30	-0.1
3,855,007	+		PFLU_RS17000	0.32	-0.5
3,855,007	+		PFLU_RS17000	0.32	-1.4
3,855,007	+		PFLU_RS17000	0.32	+2.0
3,855,008	-		PFLU_RS17000	0.32	-1.4
3,855,008	-		PFLU_RS17000	0.32	-2.4
3,855,008	-		PFLU_RS17000	0.32	+0.7
3,855,008	-		PFLU_RS17000	0.32	+0.3
3,855,013	+		PFLU_RS17000	0.32	+0.1
3,855,013	+		PFLU_RS17000	0.32	-1.1
3,855,013	+		PFLU_RS17000	0.32	+1.0
3,855,013	+		PFLU_RS17000	0.32	+4.2
3,855,013	+		PFLU_RS17000	0.32	+4.3
3,855,013	+		PFLU_RS17000	0.32	-2.3
3,855,013	+		PFLU_RS17000	0.32	-2.4
3,855,013	+		PFLU_RS17000	0.32	-1.1
3,855,014	-		PFLU_RS17000	0.32	-0.8
3,855,014	-		PFLU_RS17000	0.32	-1.6
3,855,014	-		PFLU_RS17000	0.32	-2.1
3,855,014	-		PFLU_RS17000	0.32	-1.8
3,855,014	-		PFLU_RS17000	0.32	+0.8
3,855,031	+		PFLU_RS17000	0.34	-0.3
3,855,032	-		PFLU_RS17000	0.34	-1.9
3,855,032	-		PFLU_RS17000	0.34	+0.2
3,855,098	+		PFLU_RS17000	0.39	-0.2
3,855,099	-		PFLU_RS17000	0.39	+1.1
3,855,220	-		PFLU_RS17000	0.49	+0.6
3,855,220	-		PFLU_RS17000	0.49	+0.8
3,855,255	+		PFLU_RS17000	0.52	+0.2
3,855,256	-		PFLU_RS17000	0.52	+1.8
3,855,256	-		PFLU_RS17000	0.52	-0.6
3,855,256	-		PFLU_RS17000	0.52	+2.6
3,855,382	+		PFLU_RS17000	0.63	+0.2
3,855,382	+		PFLU_RS17000	0.63	-0.5
3,855,382	+		PFLU_RS17000	0.63	+0.2
3,855,433	+		PFLU_RS17000	0.67	+0.0
3,855,434	-		PFLU_RS17000	0.67	-0.5
3,855,482	-		PFLU_RS17000	0.71	+0.4
3,855,482	-		PFLU_RS17000	0.71	-0.2
3,855,536	+		PFLU_RS17000	0.76	+0.6
3,855,537	-		PFLU_RS17000	0.76	+2.7
3,855,537	-		PFLU_RS17000	0.76	+0.2
3,855,537	-		PFLU_RS17000	0.76	-1.8
3,855,537	-		PFLU_RS17000	0.76	-1.4
3,855,538	+		PFLU_RS17000	0.76	-2.5
3,855,538	+		PFLU_RS17000	0.76	-2.0
3,855,538	+		PFLU_RS17000	0.76	-1.8
3,855,538	+		PFLU_RS17000	0.76	+2.7
3,855,538	+		PFLU_RS17000	0.76	-2.3
3,855,538	+		PFLU_RS17000	0.76	-1.0
3,855,538	+		PFLU_RS17000	0.76	+1.2
3,855,538	+		PFLU_RS17000	0.76	-2.9
3,855,538	+		PFLU_RS17000	0.76	-1.5
3,855,538	+		PFLU_RS17000	0.76	-0.2
3,855,538	+		PFLU_RS17000	0.76	+1.8
3,855,538	+		PFLU_RS17000	0.76	+1.0
3,855,538	+		PFLU_RS17000	0.76	-1.3
3,855,538	+		PFLU_RS17000	0.76	-2.4
3,855,538	+		PFLU_RS17000	0.76	+2.6
3,855,538	+		PFLU_RS17000	0.76	-0.2
3,855,538	+		PFLU_RS17000	0.76	-1.5
3,855,538	+		PFLU_RS17000	0.76	+2.4
3,855,538	+		PFLU_RS17000	0.76	-1.2
3,855,538	+		PFLU_RS17000	0.76	-1.2
3,855,538	+		PFLU_RS17000	0.76	+0.2
3,855,538	+		PFLU_RS17000	0.76	-1.4
3,855,538	+		PFLU_RS17000	0.76	-0.5
3,855,538	+		PFLU_RS17000	0.76	+1.2
3,855,538	+		PFLU_RS17000	0.76	+3.0
3,855,538	+		PFLU_RS17000	0.76	-1.2
3,855,538	+		PFLU_RS17000	0.76	+1.7
3,855,538	+		PFLU_RS17000	0.76	+1.1
3,855,538	+		PFLU_RS17000	0.76	+0.6
3,855,538	+		PFLU_RS17000	0.76	+2.4
3,855,539	-		PFLU_RS17000	0.76	+0.7
3,855,539	-		PFLU_RS17000	0.76	+0.2
3,855,539	-		PFLU_RS17000	0.76	+1.4
3,855,539	-		PFLU_RS17000	0.76	+0.8
3,855,539	-		PFLU_RS17000	0.76	-0.2
3,855,539	-		PFLU_RS17000	0.76	-1.7
3,855,539	-		PFLU_RS17000	0.76	+1.8
3,855,539	-		PFLU_RS17000	0.76	-0.8
3,855,539	-		PFLU_RS17000	0.76	-0.5
3,855,539	-		PFLU_RS17000	0.76	-1.0
3,855,539	-		PFLU_RS17000	0.76	-0.4
3,855,539	-		PFLU_RS17000	0.76	-0.8
3,855,539	-		PFLU_RS17000	0.76	-0.5
3,855,539	-		PFLU_RS17000	0.76	+2.3
3,855,539	-		PFLU_RS17000	0.76	-1.0
3,855,539	-		PFLU_RS17000	0.76	+0.7
3,855,539	-		PFLU_RS17000	0.76	-0.2
3,855,539	-		PFLU_RS17000	0.76	+3.3
3,855,539	-		PFLU_RS17000	0.76	-1.6
3,855,539	-		PFLU_RS17000	0.76	-1.0
3,855,542	+		PFLU_RS17000	0.76	+1.4
3,855,542	+		PFLU_RS17000	0.76	-0.5
3,855,542	+		PFLU_RS17000	0.76	+2.8
3,855,542	+		PFLU_RS17000	0.76	+1.0
3,855,542	+		PFLU_RS17000	0.76	+1.5
3,855,543	-		PFLU_RS17000	0.76	-2.5
3,855,543	-		PFLU_RS17000	0.76	+0.2
3,855,543	-		PFLU_RS17000	0.76	+0.2
3,855,543	-		PFLU_RS17000	0.76	-1.3
3,855,543	-		PFLU_RS17000	0.76	-1.6
3,855,543	-		PFLU_RS17000	0.76	-1.0
3,855,589	+		PFLU_RS17000	0.80	-2.2
3,855,589	+		PFLU_RS17000	0.80	+0.2
3,855,589	+		PFLU_RS17000	0.80	-0.3
3,855,590	-		PFLU_RS17000	0.80	+1.8
3,855,590	-		PFLU_RS17000	0.80	+1.6
3,855,590	-		PFLU_RS17000	0.80	+1.2
3,855,774	-				-2.5
3,855,902	+		PFLU_RS17005	0.20	+0.2
3,855,903	-		PFLU_RS17005	0.20	-0.1
3,855,960	-		PFLU_RS17005	0.29	+2.2
3,856,106	+		PFLU_RS17005	0.53	+3.7
3,856,106	+		PFLU_RS17005	0.53	-0.5
3,856,107	-		PFLU_RS17005	0.54	+0.1
3,856,107	-		PFLU_RS17005	0.54	-1.6
3,856,107	-		PFLU_RS17005	0.54	+0.2
3,856,235	+		PFLU_RS17005	0.75	-2.4
3,856,235	+		PFLU_RS17005	0.75	-2.1
3,856,235	+		PFLU_RS17005	0.75	-0.8
3,856,235	+		PFLU_RS17005	0.75	+0.6
3,856,236	-		PFLU_RS17005	0.75	+0.2
3,856,236	-		PFLU_RS17005	0.75	-1.0
3,856,236	-		PFLU_RS17005	0.75	-1.4
3,856,236	-		PFLU_RS17005	0.75	+0.2
3,856,425	+				-1.0
3,856,426	-				+1.6
3,856,427	+				-2.7
3,856,427	+				-0.8
3,856,427	+				-2.2
3,856,427	+				-2.7
3,856,428	-				-0.2
3,856,428	-				-1.0
3,856,428	-				-0.5
3,856,498	+				+0.5
3,856,498	+				+4.0
3,856,498	+				+0.8
3,856,498	+				-1.5
3,856,498	+				+1.9
3,856,498	+				+1.9
3,856,498	+				+2.7
3,856,498	+				+1.8
3,856,498	+				+4.3
3,856,498	+				+0.4
3,856,498	+				+4.0
3,856,498	+				-0.5
3,856,498	+				+1.0
3,856,498	+				-0.5
3,856,498	+				-0.5
3,856,498	+				+1.6
3,856,498	+				+2.8
3,856,498	+				-1.8
3,856,498	+				-1.9
3,856,498	+				-2.7
3,856,498	+				+0.8
3,856,499	-				+1.8
3,856,499	-				-1.6
3,856,499	-				+0.5
3,856,499	-				+4.1
3,856,499	-				+0.6
3,856,499	-				-1.4
3,856,499	-				-1.0
3,856,499	-				-0.2
3,856,499	-				-0.1
3,856,499	-				-3.4
3,856,499	-				-0.5
3,856,499	-				+3.2
3,856,499	-				+1.2
3,856,499	-				-1.4
3,856,499	-				+1.1
3,856,499	-				+0.0
3,856,499	-				-0.2
3,856,499	-				+1.3
3,856,499	-				+0.6
3,856,499	-				-1.5
3,856,499	-				-0.5
3,856,499	-				-0.2
3,856,499	-				+0.8
3,856,499	-				-0.2
3,856,499	-				-1.8
3,856,499	-				-0.5
3,856,499	-				+2.1
3,856,499	-				+0.8
3,856,500	+				+1.8
3,856,500	+				+0.5
3,856,500	+				-2.2
3,856,500	+				+0.8
3,856,500	+				+3.4
3,856,500	+				-0.5
3,856,500	+				+3.2
3,856,500	+				-2.6
3,856,500	+				-2.0
3,856,500	+				+2.8
3,856,500	+				+1.2
3,856,500	+				+2.4
3,856,500	+				+0.6
3,856,500	+				+2.6
3,856,500	+				+1.5
3,856,500	+				-0.9
3,856,500	+				-0.4
3,856,500	+				+1.8
3,856,500	+				-1.0
3,856,500	+				+3.7
3,856,500	+				-2.2
3,856,500	+				+0.2
3,856,500	+				+3.2
3,856,500	+				+0.7
3,856,501	-				+1.8
3,856,501	-				+1.1
3,856,501	-				+3.8
3,856,501	-				+1.1
3,856,501	-				+2.1
3,856,501	-				-1.0
3,856,501	-				-0.4
3,856,501	-				-0.8
3,856,501	-				-1.0
3,856,501	-				-0.5
3,856,501	-				-0.8
3,856,501	-				+4.6
3,856,648	+		PFLU_RS17010	0.13	+0.2
3,856,648	+		PFLU_RS17010	0.13	+1.1
3,856,649	-		PFLU_RS17010	0.13	-1.4
3,856,697	+		PFLU_RS17010	0.18	+1.7
3,856,697	+		PFLU_RS17010	0.18	+4.6
3,856,697	+		PFLU_RS17010	0.18	+0.1
3,856,697	+		PFLU_RS17010	0.18	+1.4
3,856,697	+		PFLU_RS17010	0.18	-0.2
3,856,697	+		PFLU_RS17010	0.18	-0.5
3,856,698	-		PFLU_RS17010	0.18	+0.8
3,856,698	-		PFLU_RS17010	0.18	-0.8
3,856,965	-		PFLU_RS17010	0.49	-1.2
3,857,187	-		PFLU_RS17010	0.75	-2.1
3,857,187	-		PFLU_RS17010	0.75	-0.5
3,857,224	+		PFLU_RS17010	0.79	+0.8
3,857,224	+		PFLU_RS17010	0.79	+1.1
3,857,224	+		PFLU_RS17010	0.79	+0.8
3,857,224	+		PFLU_RS17010	0.79	+1.8
3,857,224	+		PFLU_RS17010	0.79	+2.3
3,857,224	+		PFLU_RS17010	0.79	-0.1
3,857,224	+		PFLU_RS17010	0.79	+2.4
3,857,224	+		PFLU_RS17010	0.79	+3.3
3,857,224	+		PFLU_RS17010	0.79	+0.2
3,857,225	-		PFLU_RS17010	0.79	-2.1
3,857,225	-		PFLU_RS17010	0.79	-1.8
3,857,225	-		PFLU_RS17010	0.79	-1.6
3,857,225	-		PFLU_RS17010	0.79	+2.2
3,857,225	-		PFLU_RS17010	0.79	+1.1
3,857,225	-		PFLU_RS17010	0.79	+2.3
3,857,225	-		PFLU_RS17010	0.79	+1.3
3,857,225	-		PFLU_RS17010	0.79	-0.8
3,857,225	-		PFLU_RS17010	0.79	+2.0
3,857,225	-		PFLU_RS17010	0.79	-1.6
3,857,225	-		PFLU_RS17010	0.79	-0.8
3,857,304	-		PFLU_RS17010	0.89	-2.1
3,857,318	-				+0.2
3,857,318	-				-0.8