Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS15680

Experiment: Growth at pH9 and (C) Trisodium citrate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Growth at pH9 and (C) Trisodium citrate
3,524,517	+		PFLU_RS15675	0.39	+1.7
3,524,517	+		PFLU_RS15675	0.39	+3.3
3,524,517	+		PFLU_RS15675	0.39	-1.3
3,524,518	-		PFLU_RS15675	0.39	+1.6
3,524,518	-		PFLU_RS15675	0.39	+2.7
3,524,518	-		PFLU_RS15675	0.39	+0.1
3,524,518	-		PFLU_RS15675	0.39	+1.5
3,524,876	+		PFLU_RS15675	0.64	-0.1
3,524,876	+		PFLU_RS15675	0.64	-0.5
3,525,066	+		PFLU_RS15675	0.78	+0.9
3,525,067	-		PFLU_RS15675	0.78	+0.7
3,525,067	-		PFLU_RS15675	0.78	-1.8
3,525,194	-		PFLU_RS15675	0.87	-1.8
3,525,194	-		PFLU_RS15675	0.87	-0.9
3,525,194	-		PFLU_RS15675	0.87	+0.9
3,525,194	-		PFLU_RS15675	0.87	+1.1
3,525,194	-		PFLU_RS15675	0.87	+2.5
3,525,197	+		PFLU_RS15675	0.87	+3.2
3,525,197	+		PFLU_RS15675	0.87	-0.4
3,525,197	+		PFLU_RS15675	0.87	-1.5
3,525,197	+		PFLU_RS15675	0.87	+3.3
3,525,197	+		PFLU_RS15675	0.87	+1.5
3,525,197	+		PFLU_RS15675	0.87	-1.9
3,525,197	+		PFLU_RS15675	0.87	-0.6
3,525,197	+		PFLU_RS15675	0.87	-0.9
3,525,197	+		PFLU_RS15675	0.87	-2.0
3,525,198	-		PFLU_RS15675	0.87	+2.1
3,525,198	-		PFLU_RS15675	0.87	-1.3
3,525,198	-		PFLU_RS15675	0.87	+0.1
3,525,198	-		PFLU_RS15675	0.87	+0.3
3,525,198	-		PFLU_RS15675	0.87	+2.7
3,525,198	-		PFLU_RS15675	0.87	+0.1
3,525,198	-		PFLU_RS15675	0.87	-1.0
3,525,198	-		PFLU_RS15675	0.87	-1.5
3,525,198	-		PFLU_RS15675	0.87	+0.3
3,525,198	-		PFLU_RS15675	0.87	+0.4
3,525,232	-		PFLU_RS15675	0.89	+1.7
3,525,232	-		PFLU_RS15675	0.89	+2.4
3,525,242	+				-1.1
3,525,242	+				-2.1
3,525,306	-				+1.1
3,525,306	-				-1.6
3,525,337	+				+1.1
3,525,337	+				+0.2
3,525,337	+				+4.6
3,525,337	+				+2.1
3,525,338	-				-0.5
3,525,338	-				+3.4
3,525,338	-				+1.2
3,525,338	-				+1.7
3,525,338	-				-1.8
3,525,338	-				-0.3
3,525,338	-				-1.6
3,525,338	-				-2.1
3,525,500	+				+0.4
3,525,500	+				-0.6
3,525,500	+				-1.6
3,525,500	+				+2.3
3,525,500	+				+2.1
3,525,500	+				-0.5
3,525,500	+				+1.4
3,525,500	+				+0.6
3,525,501	-				-2.2
3,525,501	-				-3.1
3,525,501	-				-2.2
3,525,501	-				-0.3
3,525,501	-				+1.3
3,525,501	-				+1.7
3,525,501	-				-1.3
3,525,501	-				-0.3
3,525,501	-				+0.1
3,525,501	-				-1.5
3,525,518	-				-0.6
3,525,581	+				-1.8
3,525,581	+				+0.4
3,525,581	+				+2.3
3,525,581	+				+0.1
3,525,581	+				-0.6
3,525,582	-				-0.1
3,525,582	-				-0.5
3,525,641	+				+1.8
3,525,641	+				+1.2
3,525,642	-				+2.7
3,525,642	-				-1.3
3,525,668	+				-2.3
3,525,668	+				+0.8
3,525,668	+				-0.9
3,525,668	+				-0.6
3,525,668	+				-2.2
3,525,668	+				-1.5
3,525,668	+				-0.4
3,525,668	+				-0.3
3,525,668	+				-0.6
3,525,668	+				-2.2
3,525,668	+				-0.1
3,525,668	+				+0.9
3,525,668	+				+1.6
3,525,668	+				-2.1
3,525,668	+				+1.1
3,525,668	+				+0.8
3,525,668	+				+2.8
3,525,669	-				+0.7
3,525,669	-				+0.2
3,525,669	-				-3.2
3,525,669	-				+1.7
3,525,669	-				+1.0
3,525,669	-				+0.8
3,525,685	+				+2.7
3,525,686	-				-1.3
3,525,686	-				+1.5
3,525,686	-				-1.1
3,525,743	+		PFLU_RS15680	0.12	+0.1
3,525,786	-		PFLU_RS15680	0.14	-0.3
3,525,786	-		PFLU_RS15680	0.14	+0.8
3,525,789	+		PFLU_RS15680	0.14	-1.3
3,525,790	-		PFLU_RS15680	0.14	+0.5
3,525,875	+		PFLU_RS15680	0.18	-0.2
3,525,875	+		PFLU_RS15680	0.18	+2.9
3,525,875	+		PFLU_RS15680	0.18	+2.3
3,525,875	+		PFLU_RS15680	0.18	+0.1
3,525,876	-		PFLU_RS15680	0.18	+1.7
3,525,876	-		PFLU_RS15680	0.18	-0.3
3,525,876	-		PFLU_RS15680	0.18	+0.7
3,525,876	-		PFLU_RS15680	0.18	+0.7
3,525,876	-		PFLU_RS15680	0.18	-0.9
3,525,980	+		PFLU_RS15680	0.23	+1.1
3,525,980	+		PFLU_RS15680	0.23	-0.3
3,525,980	+		PFLU_RS15680	0.23	-1.0
3,525,980	+		PFLU_RS15680	0.23	-1.1
3,525,980	+		PFLU_RS15680	0.23	-2.0
3,525,980	+		PFLU_RS15680	0.23	-0.2
3,525,980	+		PFLU_RS15680	0.23	-0.3
3,525,980	+		PFLU_RS15680	0.23	-1.1
3,525,981	-		PFLU_RS15680	0.23	-0.1
3,525,981	-		PFLU_RS15680	0.23	-2.0
3,525,981	-		PFLU_RS15680	0.23	-1.1
3,525,981	-		PFLU_RS15680	0.23	+0.7
3,525,981	-		PFLU_RS15680	0.23	-1.3
3,525,981	-		PFLU_RS15680	0.23	+2.4
3,525,981	-		PFLU_RS15680	0.23	-0.1
3,526,043	+		PFLU_RS15680	0.26	-0.3
3,526,043	+		PFLU_RS15680	0.26	+0.8
3,526,043	+		PFLU_RS15680	0.26	-0.3
3,526,043	+		PFLU_RS15680	0.26	+0.4
3,526,044	-		PFLU_RS15680	0.26	-0.6
3,526,044	-		PFLU_RS15680	0.26	-1.1
3,526,044	-		PFLU_RS15680	0.26	-0.5
3,526,046	+		PFLU_RS15680	0.27	-0.9
3,526,047	-		PFLU_RS15680	0.27	+0.1
3,526,047	-		PFLU_RS15680	0.27	+0.1
3,526,047	-		PFLU_RS15680	0.27	+2.3
3,526,106	+		PFLU_RS15680	0.29	+1.4
3,526,106	+		PFLU_RS15680	0.29	+2.7
3,526,106	+		PFLU_RS15680	0.29	-0.9
3,526,107	-		PFLU_RS15680	0.30	-2.4
3,526,107	-		PFLU_RS15680	0.30	+1.2
3,526,107	-		PFLU_RS15680	0.30	+2.8
3,526,107	-		PFLU_RS15680	0.30	+1.7
3,526,119	-		PFLU_RS15680	0.30	-1.6
3,526,130	+		PFLU_RS15680	0.31	+3.1
3,526,205	+		PFLU_RS15680	0.34	-1.3
3,526,205	+		PFLU_RS15680	0.34	-0.6
3,526,205	+		PFLU_RS15680	0.34	-2.3
3,526,205	+		PFLU_RS15680	0.34	+0.4
3,526,206	-		PFLU_RS15680	0.34	+1.1
3,526,206	-		PFLU_RS15680	0.34	+0.1
3,526,206	-		PFLU_RS15680	0.34	-1.3
3,526,206	-		PFLU_RS15680	0.34	-2.5
3,526,325	+		PFLU_RS15680	0.40	+3.0
3,526,325	+		PFLU_RS15680	0.40	-0.6
3,526,325	+		PFLU_RS15680	0.40	-0.3
3,526,491	-		PFLU_RS15680	0.48	-1.3
3,526,527	-		PFLU_RS15680	0.50	-0.9
3,526,527	-		PFLU_RS15680	0.50	+0.1
3,526,625	+		PFLU_RS15680	0.55	+1.1
3,526,625	+		PFLU_RS15680	0.55	+0.7
3,526,640	+		PFLU_RS15680	0.55	+3.3
3,526,640	+		PFLU_RS15680	0.55	+2.2
3,526,640	+		PFLU_RS15680	0.55	+0.7
3,526,640	+		PFLU_RS15680	0.55	+3.6
3,526,640	+		PFLU_RS15680	0.55	+0.1
3,526,640	+		PFLU_RS15680	0.55	-2.1
3,526,640	+		PFLU_RS15680	0.55	+0.7
3,526,641	-		PFLU_RS15680	0.55	+4.3
3,526,641	-		PFLU_RS15680	0.55	+2.9
3,526,641	-		PFLU_RS15680	0.55	+0.9
3,526,641	-		PFLU_RS15680	0.55	-1.6
3,526,641	-		PFLU_RS15680	0.55	+1.4
3,526,641	-		PFLU_RS15680	0.55	-1.0
3,526,641	-		PFLU_RS15680	0.55	+0.0
3,526,641	-		PFLU_RS15680	0.55	+0.1
3,526,641	-		PFLU_RS15680	0.55	+1.2
3,526,641	-		PFLU_RS15680	0.55	+1.2
3,526,714	-		PFLU_RS15680	0.59	+0.0
3,526,725	-		PFLU_RS15680	0.59	+0.3
3,526,751	+		PFLU_RS15680	0.61	-0.6
3,526,751	+		PFLU_RS15680	0.61	-1.2
3,526,751	+		PFLU_RS15680	0.61	-1.5
3,526,751	+		PFLU_RS15680	0.61	-2.4
3,526,751	+		PFLU_RS15680	0.61	-2.2
3,526,751	+		PFLU_RS15680	0.61	-0.1
3,526,751	+		PFLU_RS15680	0.61	+1.1
3,526,752	-		PFLU_RS15680	0.61	-0.6
3,526,752	-		PFLU_RS15680	0.61	-2.1
3,526,752	-		PFLU_RS15680	0.61	+0.1
3,526,752	-		PFLU_RS15680	0.61	-1.1
3,526,752	-		PFLU_RS15680	0.61	+0.7
3,526,752	-		PFLU_RS15680	0.61	-1.1
3,526,754	+		PFLU_RS15680	0.61	+0.1
3,526,754	+		PFLU_RS15680	0.61	+0.5
3,526,754	+		PFLU_RS15680	0.61	+2.6
3,526,755	-		PFLU_RS15680	0.61	-1.8
3,526,817	+		PFLU_RS15680	0.64	+1.1
3,526,818	-		PFLU_RS15680	0.64	-1.1
3,526,818	-		PFLU_RS15680	0.64	+1.4
3,526,818	-		PFLU_RS15680	0.64	-1.1
3,526,818	-		PFLU_RS15680	0.64	+0.7
3,526,871	+		PFLU_RS15680	0.67	-1.9
3,526,871	+		PFLU_RS15680	0.67	+5.4
3,526,872	-		PFLU_RS15680	0.67	-0.3
3,526,872	-		PFLU_RS15680	0.67	+2.3
3,526,872	-		PFLU_RS15680	0.67	-0.6
3,526,923	+		PFLU_RS15680	0.69	-1.5
3,526,923	+		PFLU_RS15680	0.69	+0.7
3,526,924	-		PFLU_RS15680	0.69	+0.7
3,526,925	+		PFLU_RS15680	0.69	-1.8
3,526,925	+		PFLU_RS15680	0.69	+1.5
3,526,925	+		PFLU_RS15680	0.69	-2.8
3,526,925	+		PFLU_RS15680	0.69	-1.1
3,526,925	+		PFLU_RS15680	0.69	-2.3
3,526,925	+		PFLU_RS15680	0.69	-1.8
3,526,926	-		PFLU_RS15680	0.69	-0.3
3,526,926	-		PFLU_RS15680	0.69	+0.7
3,526,926	-		PFLU_RS15680	0.69	-0.5
3,526,926	-		PFLU_RS15680	0.69	+2.3
3,526,926	-		PFLU_RS15680	0.69	-1.6
3,526,926	-		PFLU_RS15680	0.69	+0.7
3,526,926	-		PFLU_RS15680	0.69	+0.7
3,526,926	-		PFLU_RS15680	0.69	-0.3
3,526,926	-		PFLU_RS15680	0.69	+0.7
3,527,005	+		PFLU_RS15680	0.73	-1.3
3,527,005	+		PFLU_RS15680	0.73	+0.7
3,527,005	+		PFLU_RS15680	0.73	+2.1
3,527,006	-		PFLU_RS15680	0.73	-0.3
3,527,006	-		PFLU_RS15680	0.73	-0.1
3,527,006	-		PFLU_RS15680	0.73	-0.9
3,527,021	+		PFLU_RS15680	0.74	-1.6
3,527,022	-		PFLU_RS15680	0.74	-0.6
3,527,022	-		PFLU_RS15680	0.74	-0.6
3,527,022	-		PFLU_RS15680	0.74	-2.0
3,527,219	+		PFLU_RS15680	0.83	+0.1
3,527,219	+		PFLU_RS15680	0.83	+0.7
3,527,219	+		PFLU_RS15680	0.83	-0.9
3,527,219	+		PFLU_RS15680	0.83	-0.3
3,527,219	+		PFLU_RS15680	0.83	+2.3
3,527,220	-		PFLU_RS15680	0.84	+1.2
3,527,220	-		PFLU_RS15680	0.84	-0.3
3,527,220	-		PFLU_RS15680	0.84	-0.3
3,527,318	+		PFLU_RS15680	0.88	+0.7
3,527,318	+		PFLU_RS15680	0.88	-0.9
3,527,318	+		PFLU_RS15680	0.88	-1.6
3,527,319	-		PFLU_RS15680	0.88	+0.8
3,527,319	-		PFLU_RS15680	0.88	-0.3
3,527,319	-		PFLU_RS15680	0.88	+0.1
3,527,341	+		PFLU_RS15680	0.89	-0.9
3,527,342	-		PFLU_RS15680	0.89	-2.7
3,527,342	-		PFLU_RS15680	0.89	-0.6
3,527,342	-		PFLU_RS15680	0.89	-0.1
3,527,342	-		PFLU_RS15680	0.89	-1.1
3,527,510	+				-0.8
3,527,510	+				-2.4
3,527,510	+				+2.8
3,527,510	+				+1.1
3,527,510	+				+1.7
3,527,510	+				-0.3
3,527,510	+				+0.1
3,527,510	+				-1.1
3,527,510	+				-0.3
3,527,510	+				+0.1
3,527,511	-				+2.0
3,527,524	+				-0.3
3,527,542	-				+0.7
3,527,581	+				-0.8
3,527,581	+				+0.3
3,527,581	+				+1.7
3,527,581	+				-0.2
3,527,582	-				-0.3
3,527,582	-				-2.2
3,527,582	-				+0.1
3,527,582	-				-1.1
3,527,587	+				+0.1
3,527,587	+				+0.1
3,527,593	+				-1.6
3,527,594	-				+1.9
3,527,637	-				+0.8
3,527,654	-				-1.3
3,527,661	+				+1.0
3,527,690	+				+0.1
3,527,690	+				-0.9
3,527,690	+				+2.0
3,527,690	+				+1.7
3,527,690	+				-0.3
3,527,691	-				-0.9
3,527,691	-				+1.9
3,527,691	-				-1.3
3,527,691	-				+2.0
3,527,691	-				+0.1
3,527,691	-				-0.6
3,527,693	+				+1.4
3,527,693	+				-0.9
3,527,693	+				+0.7
3,527,694	-				-1.0
3,527,694	-				+0.1
3,527,695	+				+2.5
3,527,695	+				-0.6
3,527,695	+				+0.7
3,527,696	-				-1.5
3,527,705	-				-1.3
3,527,712	+				-0.6
3,527,712	+				-1.8
3,527,712	+				-1.1
3,527,712	+				-0.9
3,527,712	+				-0.3
3,527,712	+				+1.4
3,527,712	+				+0.9
3,527,713	-				-3.3
3,527,713	-				+2.2
3,527,713	-				+1.3
3,527,713	-				-0.6
3,527,713	-				+5.4
3,527,713	-				-0.9
3,527,713	-				+1.8
3,527,713	-				-1.5
3,527,713	-				+0.7
3,527,713	-				-2.3
3,527,713	-				-1.8
3,527,713	-				+2.4
3,527,714	+				-2.1
3,527,714	+				-1.6
3,527,714	+				+0.9
3,527,714	+				+0.3
3,527,714	+				-0.3
3,527,714	+				-0.3
3,527,714	+				+1.1
3,527,714	+				+2.1
3,527,714	+				+2.2
3,527,715	-				+1.2
3,527,715	-				+2.7
3,527,715	-				-0.3
3,527,715	-				-0.3
3,527,715	-				-1.3
3,527,715	-				-2.6
3,527,715	-				-0.1
3,527,715	-				-0.3
3,527,715	-				-1.1
3,527,715	-				-0.7
3,527,715	-				+0.5
3,527,715	-				-0.3
3,527,715	-				+2.5
3,527,715	-				+1.4
3,527,715	-				-1.5
3,527,715	-				-0.9
3,527,715	-				-3.0
3,527,715	-				+2.8
3,527,722	-				-1.3
3,527,759	-				-0.7
3,527,780	+				-1.9
3,527,780	+				-0.9
3,527,781	-				+1.7
3,527,798	-				+0.7
3,527,977	+		PFLU_RS15685	0.16	-1.9
3,528,071	+		PFLU_RS15685	0.26	+0.5
3,528,071	+		PFLU_RS15685	0.26	+0.1
3,528,094	+		PFLU_RS15685	0.28	+3.4
3,528,094	+		PFLU_RS15685	0.28	+0.3
3,528,095	-		PFLU_RS15685	0.29	+1.2
3,528,095	-		PFLU_RS15685	0.29	+1.1
3,528,095	-		PFLU_RS15685	0.29	+0.7
3,528,116	+		PFLU_RS15685	0.31	-0.3
3,528,116	+		PFLU_RS15685	0.31	+1.0
3,528,116	+		PFLU_RS15685	0.31	-1.3
3,528,116	+		PFLU_RS15685	0.31	+3.0
3,528,116	+		PFLU_RS15685	0.31	-0.1
3,528,117	-		PFLU_RS15685	0.31	+4.9
3,528,173	+		PFLU_RS15685	0.37	-0.4
3,528,173	+		PFLU_RS15685	0.37	-0.3
3,528,173	+		PFLU_RS15685	0.37	+0.9
3,528,174	-		PFLU_RS15685	0.37	-0.9
3,528,174	-		PFLU_RS15685	0.37	+1.8
3,528,174	-		PFLU_RS15685	0.37	-0.6
3,528,174	-		PFLU_RS15685	0.37	+0.6
3,528,266	+		PFLU_RS15685	0.46	-0.3
3,528,266	+		PFLU_RS15685	0.46	-1.6
3,528,266	+		PFLU_RS15685	0.46	-0.1
3,528,266	+		PFLU_RS15685	0.46	+1.5
3,528,266	+		PFLU_RS15685	0.46	+3.4
3,528,266	+		PFLU_RS15685	0.46	+2.2
3,528,266	+		PFLU_RS15685	0.46	-1.4
3,528,266	+		PFLU_RS15685	0.46	+0.1
3,528,267	-		PFLU_RS15685	0.46	-1.6
3,528,267	-		PFLU_RS15685	0.46	-0.1
3,528,267	-		PFLU_RS15685	0.46	-1.6
3,528,267	-		PFLU_RS15685	0.46	-1.8
3,528,297	+		PFLU_RS15685	0.49	-2.0
3,528,297	+		PFLU_RS15685	0.49	+2.3
3,528,298	-		PFLU_RS15685	0.49	+1.6
3,528,298	-		PFLU_RS15685	0.49	-2.5
3,528,298	-		PFLU_RS15685	0.49	+1.3
3,528,298	-		PFLU_RS15685	0.49	-0.2
3,528,298	-		PFLU_RS15685	0.49	-1.6
3,528,320	+		PFLU_RS15685	0.52	-0.5
3,528,320	+		PFLU_RS15685	0.52	+1.7
3,528,320	+		PFLU_RS15685	0.52	-1.1
3,528,321	-		PFLU_RS15685	0.52	+1.7
3,528,321	-		PFLU_RS15685	0.52	+2.2
3,528,321	-		PFLU_RS15685	0.52	-0.9
3,528,321	-		PFLU_RS15685	0.52	-1.1
3,528,332	+		PFLU_RS15685	0.53	+2.2
3,528,332	+		PFLU_RS15685	0.53	-2.0
3,528,332	+		PFLU_RS15685	0.53	+0.5
3,528,333	-		PFLU_RS15685	0.53	+3.5
3,528,401	+		PFLU_RS15685	0.60	-2.3
3,528,401	+		PFLU_RS15685	0.60	+3.4
3,528,450	+		PFLU_RS15685	0.65	-0.1
3,528,450	+		PFLU_RS15685	0.65	+1.8
3,528,450	+		PFLU_RS15685	0.65	+0.2
3,528,451	-		PFLU_RS15685	0.65	+0.4
3,528,451	-		PFLU_RS15685	0.65	+3.5
3,528,451	-		PFLU_RS15685	0.65	+2.8
3,528,451	-		PFLU_RS15685	0.65	-0.9