Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS13015

Experiment: Growth at pH9 and (C) Trisodium citrate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Growth at pH9 and (C) Trisodium citrate
2,939,894	-				-0.6
2,939,894	-				-0.2
2,939,894	-				-0.6
2,939,894	-				-0.9
2,939,894	-				-1.7
2,939,894	-				-0.2
2,939,894	-				+3.1
2,939,894	-				+0.7
2,939,894	-				+3.6
2,939,894	-				-1.1
2,939,894	-				+0.8
2,939,894	-				+2.7
2,939,894	-				+2.5
2,939,894	-				-1.1
2,939,894	-				-0.6
2,939,894	-				+1.8
2,939,894	-				+3.1
2,939,894	-				-0.5
2,939,894	-				-0.1
2,939,896	-				+0.9
2,939,896	-				+1.8
2,939,896	-				+0.8
2,939,896	-				-1.1
2,939,896	-				+0.5
2,939,896	-				+0.1
2,939,896	-				-1.2
2,939,896	-				-1.7
2,939,896	-				+3.3
2,939,896	-				-0.4
2,939,896	-				+4.4
2,939,896	-				-0.8
2,939,896	-				-0.8
2,939,896	-				-2.2
2,939,896	-				+0.2
2,939,896	-				-0.7
2,939,896	-				-0.8
2,939,896	-				+0.2
2,939,896	-				+3.0
2,939,896	-				-1.9
2,939,896	-				+1.8
2,939,896	-				-1.6
2,939,896	-				-1.7
2,939,896	-				-1.6
2,939,896	-				-1.6
2,939,896	-				+1.3
2,939,896	-				-0.2
2,939,896	-				+2.3
2,939,896	-				-2.2
2,939,896	-				-0.6
2,939,896	-				-0.1
2,939,896	-				+1.1
2,939,896	-				-2.3
2,939,896	-				+0.8
2,939,896	-				+0.2
2,939,896	-				+0.2
2,939,896	-				+1.5
2,939,896	-				-0.2
2,939,896	-				-1.1
2,939,896	-				+3.4
2,939,896	-				-1.1
2,939,896	-				+0.2
2,939,896	-				-1.1
2,939,896	-				+2.0
2,939,896	-				-1.1
2,939,896	-				+0.2
2,939,896	-				+2.0
2,939,896	-				+0.4
2,939,896	-				+4.3
2,939,896	-				-0.8
2,939,896	-				+3.3
2,939,896	-				-1.1
2,939,896	-				+0.8
2,939,896	-				-0.4
2,939,896	-				+0.6
2,939,896	-				-1.2
2,939,896	-				-0.2
2,939,896	-				-1.1
2,939,896	-				-1.4
2,939,896	-				+2.2
2,939,896	-				-1.2
2,939,965	+				+0.8
2,939,965	+				-2.5
2,939,965	+				-1.4
2,939,965	+				+1.1
2,939,965	+				+0.4
2,939,965	+				-1.1
2,939,965	+				-1.9
2,939,969	+				-1.1
2,939,969	+				+0.4
2,939,969	+				-2.0
2,939,969	+				-0.4
2,939,989	+				+0.2
2,939,989	+				+1.2
2,939,989	+				+1.2
2,939,989	+				+1.3
2,940,010	+				-0.7
2,940,010	+				-0.5
2,940,010	+				+0.9
2,940,010	+				+2.8
2,940,011	-				-0.6
2,940,011	-				+2.6
2,940,011	-				+1.1
2,940,011	-				-1.2
2,940,011	-				-1.9
2,940,011	-				-0.6
2,940,011	-				-2.6
2,940,017	+				-1.7
2,940,017	+				+0.9
2,940,017	+				-0.2
2,940,017	+				+2.0
2,940,018	-				-0.4
2,940,059	+				+2.3
2,940,069	+				+1.7
2,940,070	-				-0.8
2,940,077	+				-2.2
2,940,077	+				-1.9
2,940,077	+				+3.1
2,940,081	-				-1.1
2,940,081	-				-1.9
2,940,081	-				-1.6
2,940,090	+				-0.2
2,940,131	+				-1.1
2,940,132	-				+2.1
2,940,257	-		PFLU_RS13010	0.23	-0.8
2,940,257	-		PFLU_RS13010	0.23	+3.9
2,940,319	+		PFLU_RS13010	0.34	-1.1
2,940,320	-		PFLU_RS13010	0.34	+0.3
2,940,368	-		PFLU_RS13010	0.42	-0.2
2,940,368	-		PFLU_RS13010	0.42	+0.2
2,940,466	+		PFLU_RS13010	0.59	-0.8
2,940,466	+		PFLU_RS13010	0.59	-1.1
2,940,466	+		PFLU_RS13010	0.59	-0.6
2,940,466	+		PFLU_RS13010	0.59	+2.6
2,940,466	+		PFLU_RS13010	0.59	+3.3
2,940,467	-		PFLU_RS13010	0.59	-0.6
2,940,467	-		PFLU_RS13010	0.59	-0.2
2,940,467	-		PFLU_RS13010	0.59	+1.2
2,940,467	-		PFLU_RS13010	0.59	+1.3
2,940,467	-		PFLU_RS13010	0.59	+1.8
2,940,467	-		PFLU_RS13010	0.59	+1.1
2,940,467	-		PFLU_RS13010	0.59	+0.2
2,940,467	-		PFLU_RS13010	0.59	+1.8
2,940,469	+		PFLU_RS13010	0.59	-0.8
2,940,469	+		PFLU_RS13010	0.59	-0.2
2,940,469	+		PFLU_RS13010	0.59	+0.4
2,940,469	+		PFLU_RS13010	0.59	+0.8
2,940,470	-		PFLU_RS13010	0.60	-0.6
2,940,697	+				+2.8
2,940,698	-				-0.2
2,940,700	+				+0.5
2,940,700	+				+0.4
2,940,700	+				+2.8
2,940,701	-				-1.2
2,940,701	-				+1.2
2,940,701	-				-0.2
2,940,701	-				+0.5
2,940,701	-				+0.2
2,940,701	-				-0.2
2,940,701	-				-0.1
2,940,707	+				-1.8
2,940,707	+				-1.6
2,940,707	+				+0.2
2,940,708	-				+1.5
2,940,708	-				-1.2
2,940,789	+				-0.2
2,940,818	+				-0.8
2,940,818	+				-0.2
2,940,857	-				+1.7
2,940,866	-				-1.8
2,940,876	-				-2.2
2,941,105	+		PFLU_RS13015	0.28	-0.1
2,941,106	-		PFLU_RS13015	0.28	+0.3
2,941,106	-		PFLU_RS13015	0.28	-0.6
2,941,106	-		PFLU_RS13015	0.28	+1.9
2,941,224	-		PFLU_RS13015	0.44	-0.6
2,941,384	+		PFLU_RS13015	0.66	-2.3
2,941,546	+		PFLU_RS13015	0.87	-0.1
2,941,546	+		PFLU_RS13015	0.87	-0.6
2,941,546	+		PFLU_RS13015	0.87	+1.4
2,941,546	+		PFLU_RS13015	0.87	-0.8
2,941,546	+		PFLU_RS13015	0.87	-3.2
2,941,546	+		PFLU_RS13015	0.87	-1.2
2,941,546	+		PFLU_RS13015	0.87	+0.8
2,941,546	+		PFLU_RS13015	0.87	+3.3
2,941,546	+		PFLU_RS13015	0.87	+5.1
2,941,546	+		PFLU_RS13015	0.87	-0.2
2,941,547	-		PFLU_RS13015	0.87	+1.2
2,941,547	-		PFLU_RS13015	0.87	-1.8
2,941,547	-		PFLU_RS13015	0.87	-0.6
2,941,547	-		PFLU_RS13015	0.87	-0.5
2,941,547	-		PFLU_RS13015	0.87	-2.4
2,941,547	-		PFLU_RS13015	0.87	+0.2
2,941,630	+				-0.8
2,941,630	+				+0.2
2,941,630	+				-0.7
2,941,630	+				-0.2
2,941,631	-				-1.1
2,941,631	-				-0.6
2,941,631	-				+0.0
2,941,631	-				+2.4
2,941,674	+				+3.2
2,941,675	-				+0.3
2,941,675	-				-0.8
2,941,831	+		PFLU_RS13020	0.31	-0.6
2,941,950	+		PFLU_RS13020	0.61	+1.0
2,941,950	+		PFLU_RS13020	0.61	-2.3
2,941,951	-		PFLU_RS13020	0.61	-1.6
2,941,951	-		PFLU_RS13020	0.61	+0.4
2,942,054	+		PFLU_RS13020	0.88	+0.8
2,942,054	+		PFLU_RS13020	0.88	-0.6
2,942,055	-		PFLU_RS13020	0.88	+0.4
2,942,055	-		PFLU_RS13020	0.88	-1.8
2,942,055	-		PFLU_RS13020	0.88	-0.8
2,942,055	-		PFLU_RS13020	0.88	+0.8
2,942,109	+				-1.4
2,942,110	-				-1.8
2,942,110	-				+2.0
2,942,264	+		PFLU_RS13025	0.23	-1.4
2,942,265	-		PFLU_RS13025	0.24	+0.7
2,942,265	-		PFLU_RS13025	0.24	+2.4
2,942,338	+		PFLU_RS13025	0.34	+1.5
2,942,339	-		PFLU_RS13025	0.34	-1.2
2,942,447	+		PFLU_RS13025	0.49	-1.1
2,942,448	-		PFLU_RS13025	0.50	-1.1
2,942,517	+		PFLU_RS13025	0.59	-1.6
2,942,517	+		PFLU_RS13025	0.59	-0.6
2,942,517	+		PFLU_RS13025	0.59	+1.0
2,942,517	+		PFLU_RS13025	0.59	-0.3
2,942,517	+		PFLU_RS13025	0.59	+1.0
2,942,517	+		PFLU_RS13025	0.59	+0.9
2,942,517	+		PFLU_RS13025	0.59	+2.9
2,942,518	-		PFLU_RS13025	0.59	-0.1
2,942,518	-		PFLU_RS13025	0.59	-0.6
2,942,518	-		PFLU_RS13025	0.59	-0.8
2,942,518	-		PFLU_RS13025	0.59	-1.3
2,942,518	-		PFLU_RS13025	0.59	+1.7
2,942,518	-		PFLU_RS13025	0.59	-1.0