Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS03860

Experiment: Growth at pH9 and (C) Trisodium citrate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS03855 and PFLU_RS03860 overlap by 14 nucleotidesPFLU_RS03860 and PFLU_RS03865 are separated by 123 nucleotides PFLU_RS03855: PFLU_RS03855 - glycine oxidase ThiO, at 878,021 to 879,130 _RS03855 PFLU_RS03860: PFLU_RS03860 - hypothetical protein, at 879,117 to 879,350 _RS03860 PFLU_RS03865: PFLU_RS03865 - outer membrane protein assembly factor BamD, at 879,474 to 880,499 _RS03865 Position (kb) 879 880Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 878.180 kb on + strand, within PFLU_RS03855at 878.180 kb on + strand, within PFLU_RS03855at 878.180 kb on + strand, within PFLU_RS03855at 878.180 kb on + strand, within PFLU_RS03855at 878.180 kb on + strand, within PFLU_RS03855at 878.181 kb on - strand, within PFLU_RS03855at 878.181 kb on - strand, within PFLU_RS03855at 878.192 kb on + strand, within PFLU_RS03855at 878.192 kb on + strand, within PFLU_RS03855at 878.193 kb on - strand, within PFLU_RS03855at 878.193 kb on - strand, within PFLU_RS03855at 878.195 kb on - strand, within PFLU_RS03855at 878.195 kb on - strand, within PFLU_RS03855at 878.237 kb on + strand, within PFLU_RS03855at 878.237 kb on + strand, within PFLU_RS03855at 878.238 kb on - strand, within PFLU_RS03855at 878.306 kb on + strand, within PFLU_RS03855at 878.306 kb on + strand, within PFLU_RS03855at 878.306 kb on + strand, within PFLU_RS03855at 878.306 kb on + strand, within PFLU_RS03855at 878.307 kb on - strand, within PFLU_RS03855at 878.374 kb on + strand, within PFLU_RS03855at 878.374 kb on + strand, within PFLU_RS03855at 878.441 kb on + strand, within PFLU_RS03855at 878.441 kb on + strand, within PFLU_RS03855at 878.441 kb on + strand, within PFLU_RS03855at 878.441 kb on + strand, within PFLU_RS03855at 878.441 kb on + strand, within PFLU_RS03855at 878.441 kb on + strand, within PFLU_RS03855at 878.441 kb on + strand, within PFLU_RS03855at 878.441 kb on + strand, within PFLU_RS03855at 878.441 kb on + strand, within PFLU_RS03855at 878.441 kb on + strand, within PFLU_RS03855at 878.441 kb on + strand, within PFLU_RS03855at 878.441 kb on + strand, within PFLU_RS03855at 878.441 kb on + strand, within PFLU_RS03855at 878.441 kb on + strand, within PFLU_RS03855at 878.441 kb on + strand, within PFLU_RS03855at 878.441 kb on + strand, within PFLU_RS03855at 878.441 kb on + strand, within PFLU_RS03855at 878.441 kb on + strand, within PFLU_RS03855at 878.441 kb on + strand, within PFLU_RS03855at 878.441 kb on + strand, within PFLU_RS03855at 878.441 kb on + strand, within PFLU_RS03855at 878.441 kb on + strand, within PFLU_RS03855at 878.441 kb on + strand, within PFLU_RS03855at 878.441 kb on + strand, within PFLU_RS03855at 878.441 kb on + strand, within PFLU_RS03855at 878.441 kb on + strand, within PFLU_RS03855at 878.441 kb on + strand, within PFLU_RS03855at 878.441 kb on + strand, within PFLU_RS03855at 878.441 kb on + strand, within PFLU_RS03855at 878.441 kb on + strand, within PFLU_RS03855at 878.441 kb on + strand, within PFLU_RS03855at 878.441 kb on + strand, within PFLU_RS03855at 878.441 kb on + strand, within PFLU_RS03855at 878.441 kb on + strand, within PFLU_RS03855at 878.441 kb on + strand, within PFLU_RS03855at 878.441 kb on + strand, within PFLU_RS03855at 878.441 kb on + strand, within PFLU_RS03855at 878.441 kb on + strand, within PFLU_RS03855at 878.441 kb on + strand, within PFLU_RS03855at 878.441 kb on + strand, within PFLU_RS03855at 878.442 kb on - strand, within PFLU_RS03855at 878.442 kb on - strand, within PFLU_RS03855at 878.442 kb on - strand, within PFLU_RS03855at 878.442 kb on - strand, within PFLU_RS03855at 878.442 kb on - strand, within PFLU_RS03855at 878.442 kb on - strand, within PFLU_RS03855at 878.442 kb on - strand, within PFLU_RS03855at 878.442 kb on - strand, within PFLU_RS03855at 878.442 kb on - strand, within PFLU_RS03855at 878.442 kb on - strand, within PFLU_RS03855at 878.442 kb on - strand, within PFLU_RS03855at 878.442 kb on - strand, within PFLU_RS03855at 878.442 kb on - strand, within PFLU_RS03855at 878.442 kb on - strand, within PFLU_RS03855at 878.442 kb on - strand, within PFLU_RS03855at 878.442 kb on - strand, within PFLU_RS03855at 878.442 kb on - strand, within PFLU_RS03855at 878.442 kb on - strand, within PFLU_RS03855at 878.442 kb on - strand, within PFLU_RS03855at 878.442 kb on - strand, within PFLU_RS03855at 878.442 kb on - strand, within PFLU_RS03855at 878.442 kb on - strand, within PFLU_RS03855at 878.442 kb on - strand, within PFLU_RS03855at 878.442 kb on - strand, within PFLU_RS03855at 878.442 kb on - strand, within PFLU_RS03855at 878.442 kb on - strand, within PFLU_RS03855at 878.442 kb on - strand, within PFLU_RS03855at 878.442 kb on - strand, within PFLU_RS03855at 878.442 kb on - strand, within PFLU_RS03855at 878.442 kb on - strand, within PFLU_RS03855at 878.442 kb on - strand, within PFLU_RS03855at 878.442 kb on - strand, within PFLU_RS03855at 878.442 kb on - strand, within PFLU_RS03855at 878.443 kb on + strand, within PFLU_RS03855at 878.443 kb on + strand, within PFLU_RS03855at 878.443 kb on + strand, within PFLU_RS03855at 878.443 kb on + strand, within PFLU_RS03855at 878.443 kb on + strand, within PFLU_RS03855at 878.444 kb on - strand, within PFLU_RS03855at 878.623 kb on - strand, within PFLU_RS03855at 878.692 kb on + strand, within PFLU_RS03855at 878.693 kb on - strand, within PFLU_RS03855at 878.693 kb on - strand, within PFLU_RS03855at 878.712 kb on - strand, within PFLU_RS03855at 878.712 kb on - strand, within PFLU_RS03855at 878.762 kb on + strand, within PFLU_RS03855at 878.788 kb on + strand, within PFLU_RS03855at 878.789 kb on - strand, within PFLU_RS03855at 878.803 kb on + strand, within PFLU_RS03855at 878.803 kb on + strand, within PFLU_RS03855at 878.804 kb on - strand, within PFLU_RS03855at 878.804 kb on - strand, within PFLU_RS03855at 878.804 kb on - strand, within PFLU_RS03855at 878.957 kb on + strand, within PFLU_RS03855at 878.957 kb on + strand, within PFLU_RS03855at 878.957 kb on + strand, within PFLU_RS03855at 878.957 kb on + strand, within PFLU_RS03855at 878.957 kb on + strand, within PFLU_RS03855at 878.957 kb on + strand, within PFLU_RS03855at 878.957 kb on + strand, within PFLU_RS03855at 878.957 kb on + strand, within PFLU_RS03855at 878.957 kb on + strand, within PFLU_RS03855at 878.957 kb on + strand, within PFLU_RS03855at 878.958 kb on - strand, within PFLU_RS03855at 878.958 kb on - strand, within PFLU_RS03855at 878.958 kb on - strand, within PFLU_RS03855at 878.958 kb on - strand, within PFLU_RS03855at 878.958 kb on - strand, within PFLU_RS03855at 878.958 kb on - strand, within PFLU_RS03855at 878.958 kb on - strand, within PFLU_RS03855at 878.958 kb on - strand, within PFLU_RS03855at 878.958 kb on - strand, within PFLU_RS03855at 878.958 kb on - strand, within PFLU_RS03855at 878.958 kb on - strand, within PFLU_RS03855at 878.958 kb on - strand, within PFLU_RS03855at 878.958 kb on - strand, within PFLU_RS03855at 879.009 kb on - strand, within PFLU_RS03855at 879.098 kb on + strandat 879.098 kb on + strandat 879.098 kb on + strandat 879.098 kb on + strandat 879.099 kb on - strandat 879.128 kb on + strandat 879.128 kb on + strandat 879.129 kb on - strandat 879.166 kb on + strand, within PFLU_RS03860at 879.166 kb on + strand, within PFLU_RS03860at 879.166 kb on + strand, within PFLU_RS03860at 879.166 kb on + strand, within PFLU_RS03860at 879.167 kb on - strand, within PFLU_RS03860at 879.167 kb on - strand, within PFLU_RS03860at 879.167 kb on - strand, within PFLU_RS03860at 879.167 kb on - strand, within PFLU_RS03860at 879.272 kb on + strand, within PFLU_RS03860at 879.306 kb on + strand, within PFLU_RS03860at 879.306 kb on + strand, within PFLU_RS03860at 879.306 kb on + strand, within PFLU_RS03860at 879.306 kb on + strand, within PFLU_RS03860at 879.307 kb on - strand, within PFLU_RS03860at 879.307 kb on - strand, within PFLU_RS03860at 879.307 kb on - strand, within PFLU_RS03860at 879.339 kb on + strandat 879.340 kb on - strandat 879.340 kb on - strandat 879.340 kb on - strandat 879.416 kb on + strandat 879.416 kb on + strandat 879.416 kb on + strandat 879.417 kb on - strandat 879.417 kb on - strandat 879.417 kb on - strandat 879.419 kb on + strandat 879.499 kb on + strandat 879.499 kb on + strandat 879.499 kb on + strandat 879.499 kb on + strandat 879.499 kb on + strandat 879.499 kb on + strandat 879.499 kb on + strandat 879.499 kb on + strandat 879.499 kb on + strandat 879.499 kb on + strandat 879.499 kb on + strandat 879.499 kb on + strandat 879.499 kb on + strandat 879.499 kb on + strandat 879.499 kb on + strandat 879.499 kb on + strandat 879.500 kb on - strandat 879.500 kb on - strandat 879.500 kb on - strandat 879.500 kb on - strandat 879.500 kb on - strandat 879.500 kb on - strandat 879.500 kb on - strandat 879.500 kb on - strandat 879.500 kb on - strandat 879.500 kb on - strandat 879.500 kb on - strandat 879.500 kb on - strandat 879.500 kb on - strandat 879.500 kb on - strandat 879.500 kb on - strandat 879.500 kb on - strandat 879.558 kb on + strandat 879.559 kb on - strandat 879.559 kb on - strandat 879.559 kb on - strandat 879.559 kb on - strandat 879.559 kb on - strandat 879.697 kb on + strand, within PFLU_RS03865at 879.697 kb on + strand, within PFLU_RS03865at 879.697 kb on + strand, within PFLU_RS03865at 879.697 kb on + strand, within PFLU_RS03865at 879.697 kb on + strand, within PFLU_RS03865at 879.697 kb on + strand, within PFLU_RS03865at 879.697 kb on + strand, within PFLU_RS03865at 879.697 kb on + strand, within PFLU_RS03865at 879.697 kb on + strand, within PFLU_RS03865at 879.698 kb on - strand, within PFLU_RS03865at 879.698 kb on - strand, within PFLU_RS03865at 879.698 kb on - strand, within PFLU_RS03865at 879.698 kb on - strand, within PFLU_RS03865at 879.698 kb on - strand, within PFLU_RS03865at 879.698 kb on - strand, within PFLU_RS03865at 879.698 kb on - strand, within PFLU_RS03865at 879.698 kb on - strand, within PFLU_RS03865at 879.778 kb on + strand, within PFLU_RS03865at 879.779 kb on - strand, within PFLU_RS03865at 879.779 kb on - strand, within PFLU_RS03865at 879.779 kb on - strand, within PFLU_RS03865

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at pH9 and (C) Trisodium citrate
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878,180 + PFLU_RS03855 0.14 -1.0
878,180 + PFLU_RS03855 0.14 -1.3
878,180 + PFLU_RS03855 0.14 +0.4
878,180 + PFLU_RS03855 0.14 -1.2
878,180 + PFLU_RS03855 0.14 +0.7
878,181 - PFLU_RS03855 0.14 -0.1
878,181 - PFLU_RS03855 0.14 +0.4
878,192 + PFLU_RS03855 0.15 -1.9
878,192 + PFLU_RS03855 0.15 +0.4
878,193 - PFLU_RS03855 0.15 -0.5
878,193 - PFLU_RS03855 0.15 +2.2
878,195 - PFLU_RS03855 0.16 +0.3
878,195 - PFLU_RS03855 0.16 -2.6
878,237 + PFLU_RS03855 0.19 -2.0
878,237 + PFLU_RS03855 0.19 -0.3
878,238 - PFLU_RS03855 0.20 +0.0
878,306 + PFLU_RS03855 0.26 +0.1
878,306 + PFLU_RS03855 0.26 -1.1
878,306 + PFLU_RS03855 0.26 -0.1
878,306 + PFLU_RS03855 0.26 +1.3
878,307 - PFLU_RS03855 0.26 -1.0
878,374 + PFLU_RS03855 0.32 -0.4
878,374 + PFLU_RS03855 0.32 -2.0
878,441 + PFLU_RS03855 0.38 -0.3
878,441 + PFLU_RS03855 0.38 -0.6
878,441 + PFLU_RS03855 0.38 +1.8
878,441 + PFLU_RS03855 0.38 -1.1
878,441 + PFLU_RS03855 0.38 +0.7
878,441 + PFLU_RS03855 0.38 +1.7
878,441 + PFLU_RS03855 0.38 -1.9
878,441 + PFLU_RS03855 0.38 -0.9
878,441 + PFLU_RS03855 0.38 +1.2
878,441 + PFLU_RS03855 0.38 -1.2
878,441 + PFLU_RS03855 0.38 +1.0
878,441 + PFLU_RS03855 0.38 -1.2
878,441 + PFLU_RS03855 0.38 -2.8
878,441 + PFLU_RS03855 0.38 +1.4
878,441 + PFLU_RS03855 0.38 -1.5
878,441 + PFLU_RS03855 0.38 -0.5
878,441 + PFLU_RS03855 0.38 +2.5
878,441 + PFLU_RS03855 0.38 -0.3
878,441 + PFLU_RS03855 0.38 +1.4
878,441 + PFLU_RS03855 0.38 +0.2
878,441 + PFLU_RS03855 0.38 +1.3
878,441 + PFLU_RS03855 0.38 +0.7
878,441 + PFLU_RS03855 0.38 -0.4
878,441 + PFLU_RS03855 0.38 -1.3
878,441 + PFLU_RS03855 0.38 -2.3
878,441 + PFLU_RS03855 0.38 +0.1
878,441 + PFLU_RS03855 0.38 -0.9
878,441 + PFLU_RS03855 0.38 +2.2
878,441 + PFLU_RS03855 0.38 +1.7
878,441 + PFLU_RS03855 0.38 +1.4
878,441 + PFLU_RS03855 0.38 +1.7
878,441 + PFLU_RS03855 0.38 +3.6
878,441 + PFLU_RS03855 0.38 -1.6
878,441 + PFLU_RS03855 0.38 -0.7
878,441 + PFLU_RS03855 0.38 -0.7
878,441 + PFLU_RS03855 0.38 +2.7
878,441 + PFLU_RS03855 0.38 +0.1
878,441 + PFLU_RS03855 0.38 -0.5
878,441 + PFLU_RS03855 0.38 -1.5
878,441 + PFLU_RS03855 0.38 +1.1
878,442 - PFLU_RS03855 0.38 -0.8
878,442 - PFLU_RS03855 0.38 -0.9
878,442 - PFLU_RS03855 0.38 +2.0
878,442 - PFLU_RS03855 0.38 -1.7
878,442 - PFLU_RS03855 0.38 -0.9
878,442 - PFLU_RS03855 0.38 +0.5
878,442 - PFLU_RS03855 0.38 -1.8
878,442 - PFLU_RS03855 0.38 -1.2
878,442 - PFLU_RS03855 0.38 +1.9
878,442 - PFLU_RS03855 0.38 -0.3
878,442 - PFLU_RS03855 0.38 -1.3
878,442 - PFLU_RS03855 0.38 +1.5
878,442 - PFLU_RS03855 0.38 +1.7
878,442 - PFLU_RS03855 0.38 +1.1
878,442 - PFLU_RS03855 0.38 +2.5
878,442 - PFLU_RS03855 0.38 +2.4
878,442 - PFLU_RS03855 0.38 -0.7
878,442 - PFLU_RS03855 0.38 -1.2
878,442 - PFLU_RS03855 0.38 +0.3
878,442 - PFLU_RS03855 0.38 +3.0
878,442 - PFLU_RS03855 0.38 -1.5
878,442 - PFLU_RS03855 0.38 +1.3
878,442 - PFLU_RS03855 0.38 +2.0
878,442 - PFLU_RS03855 0.38 +1.9
878,442 - PFLU_RS03855 0.38 -2.2
878,442 - PFLU_RS03855 0.38 -0.7
878,442 - PFLU_RS03855 0.38 +1.6
878,442 - PFLU_RS03855 0.38 +2.6
878,442 - PFLU_RS03855 0.38 -1.7
878,442 - PFLU_RS03855 0.38 +1.0
878,442 - PFLU_RS03855 0.38 +1.8
878,442 - PFLU_RS03855 0.38 -1.2
878,442 - PFLU_RS03855 0.38 -0.3
878,443 + PFLU_RS03855 0.38 -0.6
878,443 + PFLU_RS03855 0.38 -0.6
878,443 + PFLU_RS03855 0.38 +0.6
878,443 + PFLU_RS03855 0.38 +0.7
878,443 + PFLU_RS03855 0.38 -1.0
878,444 - PFLU_RS03855 0.38 -2.6
878,623 - PFLU_RS03855 0.54 -1.4
878,692 + PFLU_RS03855 0.60 +2.2
878,693 - PFLU_RS03855 0.61 +2.7
878,693 - PFLU_RS03855 0.61 -1.6
878,712 - PFLU_RS03855 0.62 -1.6
878,712 - PFLU_RS03855 0.62 -0.7
878,762 + PFLU_RS03855 0.67 -0.3
878,788 + PFLU_RS03855 0.69 +0.4
878,789 - PFLU_RS03855 0.69 +0.9
878,803 + PFLU_RS03855 0.70 +2.8
878,803 + PFLU_RS03855 0.70 +2.7
878,804 - PFLU_RS03855 0.71 +2.9
878,804 - PFLU_RS03855 0.71 -0.5
878,804 - PFLU_RS03855 0.71 -1.1
878,957 + PFLU_RS03855 0.84 +1.3
878,957 + PFLU_RS03855 0.84 -1.1
878,957 + PFLU_RS03855 0.84 +0.7
878,957 + PFLU_RS03855 0.84 +0.8
878,957 + PFLU_RS03855 0.84 -0.3
878,957 + PFLU_RS03855 0.84 +1.3
878,957 + PFLU_RS03855 0.84 -1.2
878,957 + PFLU_RS03855 0.84 +0.1
878,957 + PFLU_RS03855 0.84 -1.0
878,957 + PFLU_RS03855 0.84 +0.1
878,958 - PFLU_RS03855 0.84 +2.0
878,958 - PFLU_RS03855 0.84 +3.0
878,958 - PFLU_RS03855 0.84 -0.7
878,958 - PFLU_RS03855 0.84 +0.9
878,958 - PFLU_RS03855 0.84 +0.1
878,958 - PFLU_RS03855 0.84 -0.7
878,958 - PFLU_RS03855 0.84 -1.3
878,958 - PFLU_RS03855 0.84 -0.7
878,958 - PFLU_RS03855 0.84 +0.7
878,958 - PFLU_RS03855 0.84 +0.2
878,958 - PFLU_RS03855 0.84 +0.7
878,958 - PFLU_RS03855 0.84 +3.7
878,958 - PFLU_RS03855 0.84 +0.5
879,009 - PFLU_RS03855 0.89 -0.7
879,098 + +0.9
879,098 + -0.7
879,098 + -1.5
879,098 + +0.1
879,099 - -0.5
879,128 + -1.5
879,128 + -1.9
879,129 - -0.5
879,166 + PFLU_RS03860 0.21 -2.2
879,166 + PFLU_RS03860 0.21 -0.4
879,166 + PFLU_RS03860 0.21 -1.4
879,166 + PFLU_RS03860 0.21 -1.7
879,167 - PFLU_RS03860 0.21 -1.7
879,167 - PFLU_RS03860 0.21 +0.2
879,167 - PFLU_RS03860 0.21 -0.5
879,167 - PFLU_RS03860 0.21 -2.2
879,272 + PFLU_RS03860 0.66 -1.0
879,306 + PFLU_RS03860 0.81 -0.1
879,306 + PFLU_RS03860 0.81 +1.3
879,306 + PFLU_RS03860 0.81 +0.4
879,306 + PFLU_RS03860 0.81 -0.6
879,307 - PFLU_RS03860 0.81 -0.1
879,307 - PFLU_RS03860 0.81 -1.7
879,307 - PFLU_RS03860 0.81 -2.0
879,339 + -1.3
879,340 - -1.6
879,340 - -1.5
879,340 - -1.5
879,416 + +2.2
879,416 + +0.7
879,416 + -1.9
879,417 - -1.0
879,417 - -1.0
879,417 - -1.9
879,419 + -2.2
879,499 + +3.0
879,499 + -2.2
879,499 + +0.9
879,499 + +0.5
879,499 + +2.5
879,499 + -0.7
879,499 + -1.1
879,499 + -0.7
879,499 + -1.1
879,499 + +0.8
879,499 + -0.5
879,499 + +2.6
879,499 + -0.3
879,499 + -1.5
879,499 + +0.5
879,499 + -0.3
879,500 - +1.1
879,500 - -0.7
879,500 - -0.2
879,500 - +0.2
879,500 - +2.2
879,500 - -1.9
879,500 - -0.5
879,500 - -0.2
879,500 - +2.0
879,500 - -0.6
879,500 - -1.6
879,500 - +0.7
879,500 - -1.1
879,500 - +1.5
879,500 - -0.6
879,500 - +0.5
879,558 + -0.3
879,559 - +2.3
879,559 - +1.0
879,559 - -1.2
879,559 - +1.5
879,559 - -1.0
879,697 + PFLU_RS03865 0.22 -1.0
879,697 + PFLU_RS03865 0.22 -0.9
879,697 + PFLU_RS03865 0.22 -0.4
879,697 + PFLU_RS03865 0.22 -1.2
879,697 + PFLU_RS03865 0.22 +0.6
879,697 + PFLU_RS03865 0.22 -1.5
879,697 + PFLU_RS03865 0.22 -1.2
879,697 + PFLU_RS03865 0.22 +2.0
879,697 + PFLU_RS03865 0.22 -0.9
879,698 - PFLU_RS03865 0.22 +0.3
879,698 - PFLU_RS03865 0.22 -0.5
879,698 - PFLU_RS03865 0.22 +1.4
879,698 - PFLU_RS03865 0.22 -1.9
879,698 - PFLU_RS03865 0.22 -1.6
879,698 - PFLU_RS03865 0.22 -1.9
879,698 - PFLU_RS03865 0.22 -0.2
879,698 - PFLU_RS03865 0.22 +0.7
879,778 + PFLU_RS03865 0.30 -1.5
879,779 - PFLU_RS03865 0.30 -0.3
879,779 - PFLU_RS03865 0.30 -1.5
879,779 - PFLU_RS03865 0.30 -1.4

Or see this region's nucleotide sequence