Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS02205

Experiment: Growth at pH9 and (C) Trisodium citrate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPFLU_RS02200 and PFLU_RS02205 are separated by 50 nucleotidesPFLU_RS02205 and PFLU_RS02210 are separated by 334 nucleotides PFLU_RS02200: PFLU_RS02200 - mechanosensitive channel MscK, at 490,640 to 494,023 _RS02200 PFLU_RS02205: PFLU_RS02205 - potassium/proton antiporter, at 494,074 to 495,816 _RS02205 PFLU_RS02210: PFLU_RS02210 - methyl-accepting chemotaxis protein, at 496,151 to 497,776 _RS02210 Position (kb) 494 495 496Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 493.176 kb on + strand, within PFLU_RS02200at 493.176 kb on + strand, within PFLU_RS02200at 493.177 kb on - strand, within PFLU_RS02200at 493.177 kb on - strand, within PFLU_RS02200at 493.489 kb on + strand, within PFLU_RS02200at 493.489 kb on + strand, within PFLU_RS02200at 493.489 kb on + strand, within PFLU_RS02200at 493.489 kb on + strand, within PFLU_RS02200at 493.490 kb on - strand, within PFLU_RS02200at 493.490 kb on - strand, within PFLU_RS02200at 493.490 kb on - strand, within PFLU_RS02200at 493.490 kb on - strand, within PFLU_RS02200at 493.490 kb on - strand, within PFLU_RS02200at 493.490 kb on - strand, within PFLU_RS02200at 493.490 kb on - strand, within PFLU_RS02200at 493.490 kb on - strand, within PFLU_RS02200at 493.490 kb on - strand, within PFLU_RS02200at 493.490 kb on - strand, within PFLU_RS02200at 493.490 kb on - strand, within PFLU_RS02200at 493.490 kb on - strand, within PFLU_RS02200at 493.534 kb on + strand, within PFLU_RS02200at 493.534 kb on + strand, within PFLU_RS02200at 493.535 kb on - strand, within PFLU_RS02200at 493.535 kb on - strand, within PFLU_RS02200at 493.535 kb on - strand, within PFLU_RS02200at 493.535 kb on - strand, within PFLU_RS02200at 493.661 kb on + strand, within PFLU_RS02200at 493.661 kb on + strand, within PFLU_RS02200at 493.661 kb on + strand, within PFLU_RS02200at 493.662 kb on - strand, within PFLU_RS02200at 493.662 kb on - strand, within PFLU_RS02200at 493.815 kb on + strandat 493.816 kb on - strandat 493.816 kb on - strandat 493.816 kb on - strandat 493.836 kb on + strandat 493.836 kb on + strandat 493.836 kb on + strandat 493.837 kb on - strandat 493.837 kb on - strandat 493.837 kb on - strandat 493.969 kb on + strandat 494.023 kb on + strandat 494.023 kb on + strandat 494.024 kb on - strandat 494.024 kb on - strandat 494.024 kb on - strandat 494.279 kb on + strand, within PFLU_RS02205at 494.279 kb on + strand, within PFLU_RS02205at 494.280 kb on - strand, within PFLU_RS02205at 494.320 kb on + strand, within PFLU_RS02205at 494.320 kb on + strand, within PFLU_RS02205at 494.320 kb on + strand, within PFLU_RS02205at 494.321 kb on - strand, within PFLU_RS02205at 494.341 kb on + strand, within PFLU_RS02205at 494.341 kb on + strand, within PFLU_RS02205at 494.342 kb on - strand, within PFLU_RS02205at 494.342 kb on - strand, within PFLU_RS02205at 494.342 kb on - strand, within PFLU_RS02205at 494.445 kb on + strand, within PFLU_RS02205at 494.445 kb on + strand, within PFLU_RS02205at 494.446 kb on - strand, within PFLU_RS02205at 494.446 kb on - strand, within PFLU_RS02205at 494.446 kb on - strand, within PFLU_RS02205at 494.446 kb on - strand, within PFLU_RS02205at 494.448 kb on + strand, within PFLU_RS02205at 494.449 kb on - strand, within PFLU_RS02205at 494.639 kb on - strand, within PFLU_RS02205at 494.710 kb on - strand, within PFLU_RS02205at 494.729 kb on + strand, within PFLU_RS02205at 494.729 kb on + strand, within PFLU_RS02205at 494.729 kb on + strand, within PFLU_RS02205at 494.729 kb on + strand, within PFLU_RS02205at 494.730 kb on - strand, within PFLU_RS02205at 494.730 kb on - strand, within PFLU_RS02205at 494.730 kb on - strand, within PFLU_RS02205at 494.730 kb on - strand, within PFLU_RS02205at 494.730 kb on - strand, within PFLU_RS02205at 494.949 kb on + strand, within PFLU_RS02205at 494.949 kb on + strand, within PFLU_RS02205at 494.950 kb on - strand, within PFLU_RS02205at 495.012 kb on + strand, within PFLU_RS02205at 495.013 kb on - strand, within PFLU_RS02205at 495.071 kb on + strand, within PFLU_RS02205at 495.071 kb on + strand, within PFLU_RS02205at 495.072 kb on - strand, within PFLU_RS02205at 495.072 kb on - strand, within PFLU_RS02205at 495.153 kb on - strand, within PFLU_RS02205at 495.465 kb on + strand, within PFLU_RS02205at 495.514 kb on - strand, within PFLU_RS02205at 495.604 kb on + strand, within PFLU_RS02205at 495.604 kb on + strand, within PFLU_RS02205at 495.604 kb on + strand, within PFLU_RS02205at 495.605 kb on - strand, within PFLU_RS02205at 495.605 kb on - strand, within PFLU_RS02205at 495.605 kb on - strand, within PFLU_RS02205at 495.635 kb on + strand, within PFLU_RS02205at 495.636 kb on - strand, within PFLU_RS02205at 495.636 kb on - strand, within PFLU_RS02205at 495.636 kb on - strand, within PFLU_RS02205at 495.636 kb on - strand, within PFLU_RS02205at 495.647 kb on + strandat 495.647 kb on + strandat 495.647 kb on + strandat 495.648 kb on - strandat 495.648 kb on - strandat 495.648 kb on - strandat 495.651 kb on + strandat 495.652 kb on - strandat 495.748 kb on + strandat 495.748 kb on + strandat 495.748 kb on + strandat 495.749 kb on - strandat 495.749 kb on - strandat 495.749 kb on - strandat 495.823 kb on + strandat 495.823 kb on + strandat 495.824 kb on - strandat 495.824 kb on - strandat 495.824 kb on - strandat 495.884 kb on + strandat 495.884 kb on + strandat 495.884 kb on + strandat 495.884 kb on + strandat 495.884 kb on + strandat 495.884 kb on + strandat 495.885 kb on - strandat 495.885 kb on - strandat 495.885 kb on - strandat 495.885 kb on - strandat 495.885 kb on - strandat 495.885 kb on - strandat 496.058 kb on + strandat 496.058 kb on + strandat 496.058 kb on + strandat 496.058 kb on + strandat 496.058 kb on + strandat 496.058 kb on + strandat 496.059 kb on - strandat 496.059 kb on - strandat 496.059 kb on - strandat 496.059 kb on - strandat 496.059 kb on - strandat 496.059 kb on - strandat 496.059 kb on - strandat 496.059 kb on - strandat 496.064 kb on + strandat 496.153 kb on - strandat 496.153 kb on - strandat 496.169 kb on + strandat 496.169 kb on + strandat 496.170 kb on - strandat 496.250 kb on + strandat 496.250 kb on + strandat 496.715 kb on + strand, within PFLU_RS02210at 496.715 kb on + strand, within PFLU_RS02210at 496.715 kb on + strand, within PFLU_RS02210at 496.715 kb on + strand, within PFLU_RS02210at 496.715 kb on + strand, within PFLU_RS02210at 496.715 kb on + strand, within PFLU_RS02210at 496.716 kb on - strand, within PFLU_RS02210at 496.716 kb on - strand, within PFLU_RS02210at 496.716 kb on - strand, within PFLU_RS02210at 496.716 kb on - strand, within PFLU_RS02210

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Growth at pH9 and (C) Trisodium citrate
remove
493,176 + PFLU_RS02200 0.75 +2.7
493,176 + PFLU_RS02200 0.75 -1.8
493,177 - PFLU_RS02200 0.75 +1.9
493,177 - PFLU_RS02200 0.75 +0.9
493,489 + PFLU_RS02200 0.84 +1.6
493,489 + PFLU_RS02200 0.84 -2.0
493,489 + PFLU_RS02200 0.84 +0.8
493,489 + PFLU_RS02200 0.84 +2.1
493,490 - PFLU_RS02200 0.84 +0.5
493,490 - PFLU_RS02200 0.84 +1.4
493,490 - PFLU_RS02200 0.84 +2.0
493,490 - PFLU_RS02200 0.84 -0.2
493,490 - PFLU_RS02200 0.84 +0.0
493,490 - PFLU_RS02200 0.84 +2.0
493,490 - PFLU_RS02200 0.84 -1.3
493,490 - PFLU_RS02200 0.84 -1.0
493,490 - PFLU_RS02200 0.84 +1.8
493,490 - PFLU_RS02200 0.84 +1.6
493,490 - PFLU_RS02200 0.84 -0.4
493,490 - PFLU_RS02200 0.84 +0.3
493,534 + PFLU_RS02200 0.86 -1.3
493,534 + PFLU_RS02200 0.86 -2.3
493,535 - PFLU_RS02200 0.86 +1.8
493,535 - PFLU_RS02200 0.86 -2.4
493,535 - PFLU_RS02200 0.86 -1.3
493,535 - PFLU_RS02200 0.86 +1.3
493,661 + PFLU_RS02200 0.89 -2.0
493,661 + PFLU_RS02200 0.89 -2.1
493,661 + PFLU_RS02200 0.89 -1.3
493,662 - PFLU_RS02200 0.89 -1.6
493,662 - PFLU_RS02200 0.89 -1.6
493,815 + -1.8
493,816 - +0.8
493,816 - +0.0
493,816 - +0.0
493,836 + -1.6
493,836 + +0.8
493,836 + -2.4
493,837 - +2.8
493,837 - +2.4
493,837 - -0.2
493,969 + -0.5
494,023 + +2.8
494,023 + +0.2
494,024 - +2.7
494,024 - -0.7
494,024 - +0.1
494,279 + PFLU_RS02205 0.12 -0.9
494,279 + PFLU_RS02205 0.12 -0.0
494,280 - PFLU_RS02205 0.12 +3.4
494,320 + PFLU_RS02205 0.14 -1.9
494,320 + PFLU_RS02205 0.14 -2.5
494,320 + PFLU_RS02205 0.14 -1.2
494,321 - PFLU_RS02205 0.14 -0.9
494,341 + PFLU_RS02205 0.15 -1.3
494,341 + PFLU_RS02205 0.15 -0.6
494,342 - PFLU_RS02205 0.15 +0.2
494,342 - PFLU_RS02205 0.15 +0.5
494,342 - PFLU_RS02205 0.15 +0.8
494,445 + PFLU_RS02205 0.21 -0.5
494,445 + PFLU_RS02205 0.21 -1.4
494,446 - PFLU_RS02205 0.21 +0.0
494,446 - PFLU_RS02205 0.21 -3.5
494,446 - PFLU_RS02205 0.21 -3.2
494,446 - PFLU_RS02205 0.21 +0.2
494,448 + PFLU_RS02205 0.21 -0.7
494,449 - PFLU_RS02205 0.22 +0.8
494,639 - PFLU_RS02205 0.32 -1.6
494,710 - PFLU_RS02205 0.36 +0.5
494,729 + PFLU_RS02205 0.38 -1.9
494,729 + PFLU_RS02205 0.38 -1.2
494,729 + PFLU_RS02205 0.38 -1.4
494,729 + PFLU_RS02205 0.38 -0.5
494,730 - PFLU_RS02205 0.38 -2.1
494,730 - PFLU_RS02205 0.38 +1.0
494,730 - PFLU_RS02205 0.38 -2.5
494,730 - PFLU_RS02205 0.38 -2.1
494,730 - PFLU_RS02205 0.38 -2.3
494,949 + PFLU_RS02205 0.50 -1.6
494,949 + PFLU_RS02205 0.50 +1.2
494,950 - PFLU_RS02205 0.50 -2.2
495,012 + PFLU_RS02205 0.54 +1.8
495,013 - PFLU_RS02205 0.54 +1.4
495,071 + PFLU_RS02205 0.57 -2.4
495,071 + PFLU_RS02205 0.57 +1.8
495,072 - PFLU_RS02205 0.57 -0.3
495,072 - PFLU_RS02205 0.57 -0.8
495,153 - PFLU_RS02205 0.62 -2.0
495,465 + PFLU_RS02205 0.80 -2.4
495,514 - PFLU_RS02205 0.83 -1.5
495,604 + PFLU_RS02205 0.88 -0.9
495,604 + PFLU_RS02205 0.88 -1.9
495,604 + PFLU_RS02205 0.88 -0.6
495,605 - PFLU_RS02205 0.88 -0.3
495,605 - PFLU_RS02205 0.88 -1.2
495,605 - PFLU_RS02205 0.88 +0.2
495,635 + PFLU_RS02205 0.90 -1.3
495,636 - PFLU_RS02205 0.90 -1.5
495,636 - PFLU_RS02205 0.90 +0.0
495,636 - PFLU_RS02205 0.90 -0.6
495,636 - PFLU_RS02205 0.90 -2.5
495,647 + -1.3
495,647 + -2.2
495,647 + -1.3
495,648 - -2.7
495,648 - +0.8
495,648 - -1.4
495,651 + +0.2
495,652 - -1.1
495,748 + -1.0
495,748 + -3.0
495,748 + -0.2
495,749 - +1.2
495,749 - -1.3
495,749 - -1.5
495,823 + -2.3
495,823 + +2.9
495,824 - -1.9
495,824 - -1.3
495,824 - +0.7
495,884 + -1.1
495,884 + -1.4
495,884 + +1.4
495,884 + -1.9
495,884 + -0.2
495,884 + -1.0
495,885 - +0.0
495,885 - +2.7
495,885 - +0.8
495,885 - -0.6
495,885 - +0.0
495,885 - -1.8
496,058 + -0.3
496,058 + -0.9
496,058 + +2.0
496,058 + -0.9
496,058 + -0.3
496,058 + -0.2
496,059 - -1.2
496,059 - +1.8
496,059 - +0.4
496,059 - +1.0
496,059 - +0.1
496,059 - +1.8
496,059 - -0.6
496,059 - -1.6
496,064 + +0.3
496,153 - +0.6
496,153 - -0.6
496,169 + -0.3
496,169 + -0.2
496,170 - +0.2
496,250 + -1.2
496,250 + +0.6
496,715 + PFLU_RS02210 0.35 +2.1
496,715 + PFLU_RS02210 0.35 -2.6
496,715 + PFLU_RS02210 0.35 +1.6
496,715 + PFLU_RS02210 0.35 -1.3
496,715 + PFLU_RS02210 0.35 +0.7
496,715 + PFLU_RS02210 0.35 -0.2
496,716 - PFLU_RS02210 0.35 -0.9
496,716 - PFLU_RS02210 0.35 +0.5
496,716 - PFLU_RS02210 0.35 -0.6
496,716 - PFLU_RS02210 0.35 -2.9

Or see this region's nucleotide sequence