Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_1567

Experiment: L-Glutamine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_1566 and Ga0059261_1567 are separated by 132 nucleotidesGa0059261_1567 and Ga0059261_1568 are separated by 161 nucleotidesGa0059261_1568 and Ga0059261_1569 are separated by 69 nucleotidesGa0059261_1569 and Ga0059261_1570 are separated by 168 nucleotides Ga0059261_1566: Ga0059261_1566 - cytochrome o ubiquinol oxidase subunit II, at 1,637,571 to 1,638,734 _1566 Ga0059261_1567: Ga0059261_1567 - Arabinose efflux permease, at 1,638,867 to 1,640,198 _1567 Ga0059261_1568: Ga0059261_1568 - tRNA, at 1,640,360 to 1,640,434 _1568 Ga0059261_1569: Ga0059261_1569 - Response regulator receiver domain, at 1,640,504 to 1,640,881 _1569 Ga0059261_1570: Ga0059261_1570 - N-formylglutamate amidohydrolase, at 1,641,050 to 1,641,889 _1570 Position (kb) 1638 1639 1640 1641Strain fitness (log2 ratio) -2 -1 0 1 2at 1638.050 kb on - strand, within Ga0059261_1566at 1638.128 kb on - strand, within Ga0059261_1566at 1638.128 kb on - strandat 1638.128 kb on - strand, within Ga0059261_1566at 1638.154 kb on + strand, within Ga0059261_1566at 1638.155 kb on - strandat 1638.155 kb on - strand, within Ga0059261_1566at 1638.155 kb on - strand, within Ga0059261_1566at 1638.185 kb on + strand, within Ga0059261_1566at 1638.186 kb on - strand, within Ga0059261_1566at 1638.254 kb on - strand, within Ga0059261_1566at 1638.472 kb on + strand, within Ga0059261_1566at 1638.473 kb on - strand, within Ga0059261_1566at 1638.473 kb on - strand, within Ga0059261_1566at 1638.473 kb on - strand, within Ga0059261_1566at 1638.473 kb on - strand, within Ga0059261_1566at 1638.473 kb on - strand, within Ga0059261_1566at 1638.473 kb on - strand, within Ga0059261_1566at 1638.476 kb on + strand, within Ga0059261_1566at 1638.476 kb on + strand, within Ga0059261_1566at 1638.477 kb on - strand, within Ga0059261_1566at 1638.571 kb on + strand, within Ga0059261_1566at 1638.571 kb on + strand, within Ga0059261_1566at 1638.571 kb on + strand, within Ga0059261_1566at 1638.571 kb on + strand, within Ga0059261_1566at 1638.572 kb on - strand, within Ga0059261_1566at 1638.572 kb on - strand, within Ga0059261_1566at 1638.572 kb on - strand, within Ga0059261_1566at 1638.572 kb on - strand, within Ga0059261_1566at 1638.572 kb on - strand, within Ga0059261_1566at 1638.572 kb on - strandat 1638.787 kb on + strandat 1638.788 kb on - strandat 1638.834 kb on + strandat 1638.834 kb on + strandat 1638.834 kb on + strandat 1638.834 kb on + strandat 1638.834 kb on + strandat 1638.835 kb on - strandat 1638.835 kb on - strandat 1638.835 kb on - strandat 1638.835 kb on - strandat 1638.835 kb on - strandat 1638.835 kb on - strandat 1638.837 kb on + strandat 1638.837 kb on + strandat 1638.837 kb on + strandat 1638.837 kb on + strandat 1638.838 kb on - strandat 1638.838 kb on - strandat 1638.845 kb on - strandat 1638.866 kb on + strandat 1638.866 kb on + strandat 1638.867 kb on - strandat 1638.867 kb on - strandat 1639.014 kb on + strand, within Ga0059261_1567at 1639.014 kb on + strand, within Ga0059261_1567at 1639.014 kb on + strand, within Ga0059261_1567at 1639.015 kb on - strand, within Ga0059261_1567at 1639.015 kb on - strand, within Ga0059261_1567at 1639.086 kb on + strand, within Ga0059261_1567at 1639.086 kb on + strand, within Ga0059261_1567at 1639.086 kb on + strand, within Ga0059261_1567at 1639.087 kb on - strand, within Ga0059261_1567at 1639.087 kb on - strand, within Ga0059261_1567at 1639.087 kb on - strand, within Ga0059261_1567at 1639.087 kb on - strand, within Ga0059261_1567at 1639.087 kb on - strand, within Ga0059261_1567at 1639.243 kb on - strand, within Ga0059261_1567at 1639.328 kb on - strand, within Ga0059261_1567at 1639.361 kb on + strand, within Ga0059261_1567at 1639.377 kb on + strand, within Ga0059261_1567at 1639.377 kb on + strand, within Ga0059261_1567at 1639.378 kb on - strand, within Ga0059261_1567at 1639.491 kb on + strand, within Ga0059261_1567at 1639.621 kb on + strand, within Ga0059261_1567at 1639.622 kb on - strand, within Ga0059261_1567at 1639.622 kb on - strand, within Ga0059261_1567at 1639.717 kb on + strand, within Ga0059261_1567at 1639.717 kb on + strand, within Ga0059261_1567at 1639.718 kb on - strand, within Ga0059261_1567at 1639.718 kb on - strand, within Ga0059261_1567at 1639.718 kb on - strand, within Ga0059261_1567at 1639.718 kb on - strand, within Ga0059261_1567at 1639.858 kb on + strand, within Ga0059261_1567at 1639.859 kb on - strand, within Ga0059261_1567at 1639.872 kb on + strand, within Ga0059261_1567at 1639.872 kb on + strand, within Ga0059261_1567at 1639.872 kb on + strand, within Ga0059261_1567at 1639.872 kb on + strand, within Ga0059261_1567at 1639.872 kb on + strand, within Ga0059261_1567at 1639.872 kb on + strand, within Ga0059261_1567at 1639.873 kb on - strand, within Ga0059261_1567at 1639.873 kb on - strand, within Ga0059261_1567at 1639.895 kb on - strand, within Ga0059261_1567at 1639.895 kb on - strand, within Ga0059261_1567at 1639.926 kb on + strand, within Ga0059261_1567at 1639.926 kb on + strand, within Ga0059261_1567at 1639.926 kb on + strand, within Ga0059261_1567at 1639.926 kb on + strand, within Ga0059261_1567at 1639.926 kb on + strand, within Ga0059261_1567at 1639.926 kb on + strand, within Ga0059261_1567at 1639.926 kb on + strand, within Ga0059261_1567at 1639.926 kb on + strand, within Ga0059261_1567at 1639.926 kb on + strand, within Ga0059261_1567at 1639.926 kb on + strand, within Ga0059261_1567at 1639.926 kb on + strand, within Ga0059261_1567at 1639.927 kb on - strand, within Ga0059261_1567at 1639.927 kb on - strand, within Ga0059261_1567at 1639.927 kb on - strand, within Ga0059261_1567at 1639.927 kb on - strand, within Ga0059261_1567at 1639.927 kb on - strand, within Ga0059261_1567at 1639.927 kb on - strand, within Ga0059261_1567at 1639.927 kb on - strand, within Ga0059261_1567at 1639.927 kb on - strand, within Ga0059261_1567at 1639.927 kb on - strand, within Ga0059261_1567at 1639.927 kb on - strand, within Ga0059261_1567at 1639.927 kb on - strand, within Ga0059261_1567at 1639.928 kb on + strand, within Ga0059261_1567at 1639.928 kb on + strand, within Ga0059261_1567at 1639.928 kb on + strand, within Ga0059261_1567at 1639.928 kb on + strand, within Ga0059261_1567at 1639.928 kb on + strand, within Ga0059261_1567at 1639.928 kb on + strand, within Ga0059261_1567at 1639.928 kb on + strand, within Ga0059261_1567at 1639.928 kb on + strand, within Ga0059261_1567at 1639.928 kb on + strand, within Ga0059261_1567at 1639.928 kb on + strand, within Ga0059261_1567at 1639.929 kb on - strand, within Ga0059261_1567at 1639.929 kb on - strand, within Ga0059261_1567at 1639.929 kb on - strandat 1639.929 kb on - strand, within Ga0059261_1567at 1639.929 kb on - strand, within Ga0059261_1567at 1639.929 kb on - strand, within Ga0059261_1567at 1639.929 kb on - strand, within Ga0059261_1567at 1639.929 kb on - strand, within Ga0059261_1567at 1639.929 kb on - strand, within Ga0059261_1567at 1639.929 kb on - strand, within Ga0059261_1567at 1639.929 kb on - strand, within Ga0059261_1567at 1639.929 kb on - strand, within Ga0059261_1567at 1640.013 kb on + strand, within Ga0059261_1567at 1640.015 kb on + strand, within Ga0059261_1567at 1640.015 kb on + strand, within Ga0059261_1567at 1640.016 kb on - strand, within Ga0059261_1567at 1640.107 kb on + strandat 1640.107 kb on + strandat 1640.107 kb on + strandat 1640.107 kb on + strandat 1640.124 kb on + strandat 1640.124 kb on + strandat 1640.124 kb on + strandat 1640.124 kb on + strandat 1640.124 kb on + strandat 1640.125 kb on - strandat 1640.196 kb on + strandat 1640.196 kb on + strandat 1640.196 kb on + strandat 1640.196 kb on + strandat 1640.196 kb on + strandat 1640.197 kb on - strandat 1640.197 kb on - strandat 1640.197 kb on - strandat 1640.726 kb on - strand, within Ga0059261_1569at 1640.805 kb on + strand, within Ga0059261_1569at 1640.806 kb on - strand, within Ga0059261_1569at 1640.835 kb on + strandat 1640.835 kb on + strand, within Ga0059261_1569at 1640.836 kb on - strand, within Ga0059261_1569at 1640.836 kb on - strand, within Ga0059261_1569at 1640.892 kb on - strandat 1640.892 kb on - strandat 1640.952 kb on + strandat 1640.953 kb on - strandat 1640.967 kb on + strandat 1641.137 kb on + strand, within Ga0059261_1570at 1641.137 kb on + strand, within Ga0059261_1570at 1641.138 kb on - strand, within Ga0059261_1570at 1641.138 kb on - strand, within Ga0059261_1570at 1641.138 kb on - strand, within Ga0059261_1570

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (C)
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1,638,050 - Ga0059261_1566 0.41 +0.4
1,638,128 - Ga0059261_1566 0.48 -0.6
1,638,128 - +0.6
1,638,128 - Ga0059261_1566 0.48 +0.3
1,638,154 + Ga0059261_1566 0.50 +1.5
1,638,155 - -1.2
1,638,155 - Ga0059261_1566 0.50 +0.2
1,638,155 - Ga0059261_1566 0.50 +2.2
1,638,185 + Ga0059261_1566 0.53 -1.2
1,638,186 - Ga0059261_1566 0.53 +0.6
1,638,254 - Ga0059261_1566 0.59 +0.3
1,638,472 + Ga0059261_1566 0.77 +0.1
1,638,473 - Ga0059261_1566 0.77 +1.0
1,638,473 - Ga0059261_1566 0.77 -0.2
1,638,473 - Ga0059261_1566 0.77 -0.1
1,638,473 - Ga0059261_1566 0.77 +0.0
1,638,473 - Ga0059261_1566 0.77 -0.2
1,638,473 - Ga0059261_1566 0.77 -0.4
1,638,476 + Ga0059261_1566 0.78 +0.0
1,638,476 + Ga0059261_1566 0.78 +0.1
1,638,477 - Ga0059261_1566 0.78 +0.5
1,638,571 + Ga0059261_1566 0.86 -0.2
1,638,571 + Ga0059261_1566 0.86 +0.4
1,638,571 + Ga0059261_1566 0.86 -0.8
1,638,571 + Ga0059261_1566 0.86 +0.5
1,638,572 - Ga0059261_1566 0.86 -1.4
1,638,572 - Ga0059261_1566 0.86 -0.4
1,638,572 - Ga0059261_1566 0.86 -0.9
1,638,572 - Ga0059261_1566 0.86 +0.0
1,638,572 - Ga0059261_1566 0.86 -0.3
1,638,572 - +1.3
1,638,787 + -0.5
1,638,788 - +0.1
1,638,834 + +0.0
1,638,834 + +0.6
1,638,834 + +0.3
1,638,834 + -0.5
1,638,834 + +0.6
1,638,835 - -0.2
1,638,835 - -0.6
1,638,835 - -0.4
1,638,835 - -0.3
1,638,835 - -0.7
1,638,835 - -0.7
1,638,837 + +0.0
1,638,837 + +0.8
1,638,837 + -1.1
1,638,837 + +0.5
1,638,838 - -0.5
1,638,838 - -0.5
1,638,845 - -1.4
1,638,866 + -0.7
1,638,866 + +0.1
1,638,867 - -0.4
1,638,867 - -0.7
1,639,014 + Ga0059261_1567 0.11 -0.2
1,639,014 + Ga0059261_1567 0.11 -0.7
1,639,014 + Ga0059261_1567 0.11 -0.8
1,639,015 - Ga0059261_1567 0.11 -1.8
1,639,015 - Ga0059261_1567 0.11 -1.9
1,639,086 + Ga0059261_1567 0.16 -0.8
1,639,086 + Ga0059261_1567 0.16 -1.1
1,639,086 + Ga0059261_1567 0.16 -0.4
1,639,087 - Ga0059261_1567 0.17 -1.5
1,639,087 - Ga0059261_1567 0.17 -1.1
1,639,087 - Ga0059261_1567 0.17 -1.1
1,639,087 - Ga0059261_1567 0.17 -0.0
1,639,087 - Ga0059261_1567 0.17 +0.0
1,639,243 - Ga0059261_1567 0.28 -1.1
1,639,328 - Ga0059261_1567 0.35 -2.6
1,639,361 + Ga0059261_1567 0.37 -1.1
1,639,377 + Ga0059261_1567 0.38 -0.4
1,639,377 + Ga0059261_1567 0.38 -0.7
1,639,378 - Ga0059261_1567 0.38 +0.4
1,639,491 + Ga0059261_1567 0.47 -0.4
1,639,621 + Ga0059261_1567 0.57 -0.1
1,639,622 - Ga0059261_1567 0.57 -0.9
1,639,622 - Ga0059261_1567 0.57 -0.3
1,639,717 + Ga0059261_1567 0.64 -1.5
1,639,717 + Ga0059261_1567 0.64 -0.6
1,639,718 - Ga0059261_1567 0.64 -0.2
1,639,718 - Ga0059261_1567 0.64 -0.6
1,639,718 - Ga0059261_1567 0.64 +1.3
1,639,718 - Ga0059261_1567 0.64 +0.0
1,639,858 + Ga0059261_1567 0.74 +0.0
1,639,859 - Ga0059261_1567 0.74 -0.4
1,639,872 + Ga0059261_1567 0.75 -0.6
1,639,872 + Ga0059261_1567 0.75 -0.8
1,639,872 + Ga0059261_1567 0.75 -0.2
1,639,872 + Ga0059261_1567 0.75 -0.7
1,639,872 + Ga0059261_1567 0.75 -1.1
1,639,872 + Ga0059261_1567 0.75 +0.0
1,639,873 - Ga0059261_1567 0.76 -1.5
1,639,873 - Ga0059261_1567 0.76 -1.0
1,639,895 - Ga0059261_1567 0.77 -2.2
1,639,895 - Ga0059261_1567 0.77 -0.1
1,639,926 + Ga0059261_1567 0.80 +0.6
1,639,926 + Ga0059261_1567 0.80 -1.8
1,639,926 + Ga0059261_1567 0.80 +0.4
1,639,926 + Ga0059261_1567 0.80 -0.6
1,639,926 + Ga0059261_1567 0.80 -0.4
1,639,926 + Ga0059261_1567 0.80 +0.0
1,639,926 + Ga0059261_1567 0.80 -0.6
1,639,926 + Ga0059261_1567 0.80 -0.8
1,639,926 + Ga0059261_1567 0.80 -0.1
1,639,926 + Ga0059261_1567 0.80 -0.8
1,639,926 + Ga0059261_1567 0.80 -0.4
1,639,927 - Ga0059261_1567 0.80 -0.8
1,639,927 - Ga0059261_1567 0.80 -0.8
1,639,927 - Ga0059261_1567 0.80 +0.6
1,639,927 - Ga0059261_1567 0.80 +0.0
1,639,927 - Ga0059261_1567 0.80 +0.9
1,639,927 - Ga0059261_1567 0.80 -1.1
1,639,927 - Ga0059261_1567 0.80 +0.6
1,639,927 - Ga0059261_1567 0.80 -0.5
1,639,927 - Ga0059261_1567 0.80 +0.1
1,639,927 - Ga0059261_1567 0.80 -0.1
1,639,927 - Ga0059261_1567 0.80 -0.2
1,639,928 + Ga0059261_1567 0.80 -0.8
1,639,928 + Ga0059261_1567 0.80 -0.3
1,639,928 + Ga0059261_1567 0.80 -1.1
1,639,928 + Ga0059261_1567 0.80 -0.1
1,639,928 + Ga0059261_1567 0.80 -1.4
1,639,928 + Ga0059261_1567 0.80 -0.3
1,639,928 + Ga0059261_1567 0.80 -0.7
1,639,928 + Ga0059261_1567 0.80 -0.6
1,639,928 + Ga0059261_1567 0.80 -0.4
1,639,928 + Ga0059261_1567 0.80 -1.5
1,639,929 - Ga0059261_1567 0.80 -1.2
1,639,929 - Ga0059261_1567 0.80 +0.2
1,639,929 - -0.2
1,639,929 - Ga0059261_1567 0.80 -0.2
1,639,929 - Ga0059261_1567 0.80 -0.2
1,639,929 - Ga0059261_1567 0.80 -1.6
1,639,929 - Ga0059261_1567 0.80 -0.5
1,639,929 - Ga0059261_1567 0.80 +0.2
1,639,929 - Ga0059261_1567 0.80 -1.1
1,639,929 - Ga0059261_1567 0.80 -0.8
1,639,929 - Ga0059261_1567 0.80 -0.8
1,639,929 - Ga0059261_1567 0.80 +0.0
1,640,013 + Ga0059261_1567 0.86 -1.5
1,640,015 + Ga0059261_1567 0.86 +1.0
1,640,015 + Ga0059261_1567 0.86 -1.3
1,640,016 - Ga0059261_1567 0.86 -0.8
1,640,107 + -1.3
1,640,107 + -0.9
1,640,107 + -0.5
1,640,107 + -0.2
1,640,124 + -0.4
1,640,124 + -2.1
1,640,124 + -1.5
1,640,124 + -1.1
1,640,124 + -0.6
1,640,125 - +0.5
1,640,196 + +0.7
1,640,196 + -0.7
1,640,196 + -0.1
1,640,196 + -0.3
1,640,196 + -0.6
1,640,197 - -0.5
1,640,197 - +0.1
1,640,197 - +0.6
1,640,726 - Ga0059261_1569 0.59 +0.2
1,640,805 + Ga0059261_1569 0.80 +0.1
1,640,806 - Ga0059261_1569 0.80 +0.3
1,640,835 + +0.0
1,640,835 + Ga0059261_1569 0.88 +0.0
1,640,836 - Ga0059261_1569 0.88 -0.9
1,640,836 - Ga0059261_1569 0.88 -0.1
1,640,892 - +0.5
1,640,892 - -0.4
1,640,952 + -0.6
1,640,953 - -0.2
1,640,967 + -0.4
1,641,137 + Ga0059261_1570 0.10 -0.7
1,641,137 + Ga0059261_1570 0.10 -0.6
1,641,138 - Ga0059261_1570 0.10 +0.4
1,641,138 - Ga0059261_1570 0.10 +0.8
1,641,138 - Ga0059261_1570 0.10 -0.9

Or see this region's nucleotide sequence