Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_1503

Experiment: L-Glutamine (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGa0059261_1502 and Ga0059261_1503 are separated by 250 nucleotidesGa0059261_1503 and Ga0059261_1504 are separated by 95 nucleotidesGa0059261_1504 and Ga0059261_1505 are separated by 20 nucleotides Ga0059261_1502: Ga0059261_1502 - hypothetical protein, at 1,585,788 to 1,586,636 _1502 Ga0059261_1503: Ga0059261_1503 - replicative DNA helicase, at 1,586,887 to 1,588,401 _1503 Ga0059261_1504: Ga0059261_1504 - Uncharacterized protein conserved in bacteria, at 1,588,497 to 1,588,979 _1504 Ga0059261_1505: Ga0059261_1505 - Lyzozyme M1 (1,4-beta-N-acetylmuramidase), at 1,589,000 to 1,589,677 _1505 Position (kb) 1586 1587 1588 1589Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1585.899 kb on + strand, within Ga0059261_1502at 1585.899 kb on + strand, within Ga0059261_1502at 1585.899 kb on + strandat 1585.900 kb on - strand, within Ga0059261_1502at 1585.900 kb on - strand, within Ga0059261_1502at 1585.900 kb on - strand, within Ga0059261_1502at 1585.900 kb on - strand, within Ga0059261_1502at 1585.900 kb on - strand, within Ga0059261_1502at 1585.900 kb on - strand, within Ga0059261_1502at 1585.900 kb on - strand, within Ga0059261_1502at 1585.945 kb on - strand, within Ga0059261_1502at 1585.945 kb on - strand, within Ga0059261_1502at 1585.978 kb on + strand, within Ga0059261_1502at 1585.979 kb on + strand, within Ga0059261_1502at 1585.979 kb on + strand, within Ga0059261_1502at 1585.979 kb on + strand, within Ga0059261_1502at 1585.979 kb on + strand, within Ga0059261_1502at 1585.979 kb on + strand, within Ga0059261_1502at 1585.979 kb on + strand, within Ga0059261_1502at 1585.979 kb on + strand, within Ga0059261_1502at 1585.979 kb on + strand, within Ga0059261_1502at 1585.979 kb on + strand, within Ga0059261_1502at 1585.979 kb on + strand, within Ga0059261_1502at 1585.980 kb on - strand, within Ga0059261_1502at 1585.980 kb on - strand, within Ga0059261_1502at 1585.980 kb on - strandat 1585.980 kb on - strand, within Ga0059261_1502at 1585.980 kb on - strand, within Ga0059261_1502at 1585.980 kb on - strand, within Ga0059261_1502at 1585.980 kb on - strand, within Ga0059261_1502at 1585.980 kb on - strand, within Ga0059261_1502at 1585.980 kb on - strand, within Ga0059261_1502at 1585.980 kb on - strand, within Ga0059261_1502at 1585.980 kb on - strandat 1585.982 kb on - strand, within Ga0059261_1502at 1585.982 kb on - strand, within Ga0059261_1502at 1586.047 kb on - strand, within Ga0059261_1502at 1586.305 kb on - strand, within Ga0059261_1502at 1586.460 kb on + strand, within Ga0059261_1502at 1586.460 kb on + strand, within Ga0059261_1502at 1586.460 kb on + strand, within Ga0059261_1502at 1586.460 kb on + strand, within Ga0059261_1502at 1586.460 kb on + strand, within Ga0059261_1502at 1586.460 kb on + strand, within Ga0059261_1502at 1586.460 kb on + strand, within Ga0059261_1502at 1586.460 kb on + strand, within Ga0059261_1502at 1586.461 kb on - strand, within Ga0059261_1502at 1586.461 kb on - strand, within Ga0059261_1502at 1586.461 kb on - strand, within Ga0059261_1502at 1586.461 kb on - strand, within Ga0059261_1502at 1586.461 kb on - strand, within Ga0059261_1502at 1586.461 kb on - strand, within Ga0059261_1502at 1586.461 kb on - strand, within Ga0059261_1502at 1586.461 kb on - strand, within Ga0059261_1502at 1586.461 kb on - strand, within Ga0059261_1502at 1586.470 kb on - strand, within Ga0059261_1502at 1586.499 kb on + strand, within Ga0059261_1502at 1586.499 kb on + strand, within Ga0059261_1502at 1586.499 kb on + strand, within Ga0059261_1502at 1586.500 kb on - strand, within Ga0059261_1502at 1586.561 kb on + strandat 1586.561 kb on + strandat 1586.561 kb on + strandat 1586.561 kb on + strandat 1586.562 kb on - strandat 1586.580 kb on + strandat 1586.580 kb on + strandat 1586.580 kb on + strandat 1586.581 kb on - strandat 1586.581 kb on - strandat 1586.644 kb on - strandat 1586.644 kb on - strandat 1586.644 kb on - strandat 1586.644 kb on - strandat 1586.667 kb on - strandat 1586.855 kb on + strandat 1586.856 kb on - strandat 1586.897 kb on + strandat 1586.897 kb on + strandat 1586.898 kb on - strandat 1586.898 kb on - strandat 1586.921 kb on + strandat 1586.921 kb on + strandat 1586.922 kb on - strandat 1586.922 kb on - strandat 1588.411 kb on - strandat 1588.411 kb on - strandat 1588.411 kb on - strandat 1588.411 kb on - strandat 1588.411 kb on - strandat 1588.415 kb on - strandat 1588.415 kb on - strandat 1588.454 kb on - strandat 1588.454 kb on - strandat 1588.468 kb on + strandat 1588.468 kb on + strandat 1588.469 kb on - strandat 1588.469 kb on - strandat 1588.469 kb on - strandat 1588.484 kb on + strandat 1588.485 kb on - strandat 1588.485 kb on - strandat 1588.485 kb on - strandat 1588.485 kb on - strandat 1588.485 kb on - strandat 1588.645 kb on - strand, within Ga0059261_1504at 1588.776 kb on + strand, within Ga0059261_1504at 1588.776 kb on + strand, within Ga0059261_1504at 1588.777 kb on - strand, within Ga0059261_1504at 1588.777 kb on - strand, within Ga0059261_1504at 1588.777 kb on - strand, within Ga0059261_1504at 1588.797 kb on + strand, within Ga0059261_1504at 1588.797 kb on + strand, within Ga0059261_1504at 1588.797 kb on + strand, within Ga0059261_1504at 1588.797 kb on + strand, within Ga0059261_1504at 1588.797 kb on + strand, within Ga0059261_1504at 1588.797 kb on + strand, within Ga0059261_1504at 1588.798 kb on - strand, within Ga0059261_1504at 1588.798 kb on - strand, within Ga0059261_1504at 1588.887 kb on + strand, within Ga0059261_1504at 1588.981 kb on + strandat 1589.072 kb on + strand, within Ga0059261_1505at 1589.073 kb on - strand, within Ga0059261_1505at 1589.105 kb on + strandat 1589.105 kb on + strand, within Ga0059261_1505at 1589.106 kb on - strand, within Ga0059261_1505at 1589.106 kb on - strand, within Ga0059261_1505at 1589.106 kb on - strand, within Ga0059261_1505at 1589.189 kb on + strand, within Ga0059261_1505at 1589.261 kb on - strand, within Ga0059261_1505at 1589.261 kb on - strand, within Ga0059261_1505at 1589.261 kb on - strandat 1589.261 kb on - strand, within Ga0059261_1505

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (C)
remove
1,585,899 + Ga0059261_1502 0.13 +1.6
1,585,899 + Ga0059261_1502 0.13 -1.2
1,585,899 + -0.7
1,585,900 - Ga0059261_1502 0.13 +0.4
1,585,900 - Ga0059261_1502 0.13 +0.3
1,585,900 - Ga0059261_1502 0.13 +0.5
1,585,900 - Ga0059261_1502 0.13 +0.2
1,585,900 - Ga0059261_1502 0.13 -0.4
1,585,900 - Ga0059261_1502 0.13 -0.5
1,585,900 - Ga0059261_1502 0.13 -0.3
1,585,945 - Ga0059261_1502 0.18 -0.2
1,585,945 - Ga0059261_1502 0.18 -0.2
1,585,978 + Ga0059261_1502 0.22 -0.5
1,585,979 + Ga0059261_1502 0.22 -0.2
1,585,979 + Ga0059261_1502 0.22 -1.2
1,585,979 + Ga0059261_1502 0.22 +0.6
1,585,979 + Ga0059261_1502 0.22 -0.2
1,585,979 + Ga0059261_1502 0.22 +0.0
1,585,979 + Ga0059261_1502 0.22 -0.1
1,585,979 + Ga0059261_1502 0.22 +0.1
1,585,979 + Ga0059261_1502 0.22 -0.5
1,585,979 + Ga0059261_1502 0.22 -0.2
1,585,979 + Ga0059261_1502 0.22 +0.6
1,585,980 - Ga0059261_1502 0.23 -0.1
1,585,980 - Ga0059261_1502 0.23 -0.4
1,585,980 - +0.6
1,585,980 - Ga0059261_1502 0.23 -0.6
1,585,980 - Ga0059261_1502 0.23 +1.0
1,585,980 - Ga0059261_1502 0.23 -0.0
1,585,980 - Ga0059261_1502 0.23 -0.2
1,585,980 - Ga0059261_1502 0.23 -0.3
1,585,980 - Ga0059261_1502 0.23 -0.0
1,585,980 - Ga0059261_1502 0.23 +0.9
1,585,980 - +1.0
1,585,982 - Ga0059261_1502 0.23 -0.1
1,585,982 - Ga0059261_1502 0.23 +0.8
1,586,047 - Ga0059261_1502 0.31 -0.0
1,586,305 - Ga0059261_1502 0.61 +0.5
1,586,460 + Ga0059261_1502 0.79 +1.0
1,586,460 + Ga0059261_1502 0.79 +0.7
1,586,460 + Ga0059261_1502 0.79 +0.3
1,586,460 + Ga0059261_1502 0.79 +0.6
1,586,460 + Ga0059261_1502 0.79 -0.6
1,586,460 + Ga0059261_1502 0.79 -0.2
1,586,460 + Ga0059261_1502 0.79 +0.0
1,586,460 + Ga0059261_1502 0.79 -0.2
1,586,461 - Ga0059261_1502 0.79 -0.1
1,586,461 - Ga0059261_1502 0.79 -0.8
1,586,461 - Ga0059261_1502 0.79 +0.3
1,586,461 - Ga0059261_1502 0.79 +0.2
1,586,461 - Ga0059261_1502 0.79 -0.3
1,586,461 - Ga0059261_1502 0.79 +0.1
1,586,461 - Ga0059261_1502 0.79 +0.7
1,586,461 - Ga0059261_1502 0.79 -2.0
1,586,461 - Ga0059261_1502 0.79 +0.8
1,586,470 - Ga0059261_1502 0.80 +0.3
1,586,499 + Ga0059261_1502 0.84 -1.0
1,586,499 + Ga0059261_1502 0.84 -0.8
1,586,499 + Ga0059261_1502 0.84 +0.6
1,586,500 - Ga0059261_1502 0.84 +0.9
1,586,561 + -1.1
1,586,561 + +0.0
1,586,561 + -0.0
1,586,561 + -0.8
1,586,562 - +0.1
1,586,580 + +0.2
1,586,580 + +0.4
1,586,580 + +0.4
1,586,581 - +1.0
1,586,581 - +0.2
1,586,644 - -0.1
1,586,644 - +0.1
1,586,644 - +0.4
1,586,644 - +0.1
1,586,667 - -0.6
1,586,855 + +0.3
1,586,856 - -0.7
1,586,897 + +0.4
1,586,897 + -1.1
1,586,898 - +0.1
1,586,898 - -0.4
1,586,921 + +0.9
1,586,921 + +0.7
1,586,922 - -2.0
1,586,922 - +0.5
1,588,411 - +0.4
1,588,411 - +1.3
1,588,411 - +1.6
1,588,411 - +0.8
1,588,411 - +0.2
1,588,415 - +0.3
1,588,415 - +1.2
1,588,454 - -0.1
1,588,454 - +0.6
1,588,468 + -0.6
1,588,468 + +0.1
1,588,469 - -1.6
1,588,469 - +0.6
1,588,469 - -1.6
1,588,484 + -0.2
1,588,485 - -0.8
1,588,485 - -1.3
1,588,485 - -1.2
1,588,485 - -0.7
1,588,485 - -0.5
1,588,645 - Ga0059261_1504 0.31 -1.6
1,588,776 + Ga0059261_1504 0.58 -1.5
1,588,776 + Ga0059261_1504 0.58 -0.3
1,588,777 - Ga0059261_1504 0.58 -1.8
1,588,777 - Ga0059261_1504 0.58 -1.3
1,588,777 - Ga0059261_1504 0.58 +0.3
1,588,797 + Ga0059261_1504 0.62 -1.1
1,588,797 + Ga0059261_1504 0.62 -2.1
1,588,797 + Ga0059261_1504 0.62 -2.2
1,588,797 + Ga0059261_1504 0.62 -1.0
1,588,797 + Ga0059261_1504 0.62 -0.3
1,588,797 + Ga0059261_1504 0.62 -3.0
1,588,798 - Ga0059261_1504 0.62 -0.9
1,588,798 - Ga0059261_1504 0.62 -2.2
1,588,887 + Ga0059261_1504 0.81 -4.3
1,588,981 + +0.2
1,589,072 + Ga0059261_1505 0.11 -0.3
1,589,073 - Ga0059261_1505 0.11 +1.6
1,589,105 + +0.3
1,589,105 + Ga0059261_1505 0.15 +0.3
1,589,106 - Ga0059261_1505 0.16 +0.1
1,589,106 - Ga0059261_1505 0.16 +0.5
1,589,106 - Ga0059261_1505 0.16 +2.6
1,589,189 + Ga0059261_1505 0.28 +0.2
1,589,261 - Ga0059261_1505 0.38 -0.3
1,589,261 - Ga0059261_1505 0.38 +0.5
1,589,261 - +0.6
1,589,261 - Ga0059261_1505 0.38 +0.9

Or see this region's nucleotide sequence