Experiment: PYE with Spectinomycin 0.08 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02035 and CCNA_R0047 are separated by 302 nucleotides CCNA_R0047 and CCNA_02036 are separated by 106 nucleotides CCNA_02036 and CCNA_02037 are separated by 143 nucleotides CCNA_02037 and CCNA_02039 are separated by 394 nucleotides
CCNA_02035: CCNA_02035 - glycosyltransferase, at 2,178,958 to 2,180,166
_02035
CCNA_R0047: CCNA_R0047 - tRNA-Val, at 2,180,469 to 2,180,543
_R0047
CCNA_02036: CCNA_02036 - DNA-binding protein HU, at 2,180,650 to 2,180,928
_02036
CCNA_02037: CCNA_02037 - ATP-dependent endopeptidase Lon, at 2,181,072 to 2,183,471
_02037
CCNA_02039: CCNA_02039 - ATP-dependent endopeptidase clp, ATP-binding subunit ClpX, at 2,183,866 to 2,185,128
_02039
Position (kb)
2181
2182
2183
2184 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2180.141 kb on - strand at 2180.141 kb on - strand at 2180.265 kb on - strand at 2180.271 kb on + strand at 2180.296 kb on + strand at 2180.392 kb on - strand at 2180.394 kb on + strand at 2180.394 kb on + strand at 2180.394 kb on + strand at 2180.402 kb on - strand at 2180.470 kb on + strand at 2180.471 kb on - strand at 2180.471 kb on - strand at 2180.501 kb on - strand, within CCNA_R0047 at 2180.515 kb on - strand, within CCNA_R0047 at 2180.521 kb on + strand, within CCNA_R0047 at 2180.521 kb on + strand, within CCNA_R0047 at 2180.521 kb on + strand, within CCNA_R0047 at 2180.521 kb on + strand, within CCNA_R0047 at 2180.540 kb on + strand at 2180.542 kb on + strand at 2180.668 kb on + strand at 2180.668 kb on + strand at 2180.668 kb on + strand at 2180.676 kb on - strand at 2180.699 kb on + strand, within CCNA_02036 at 2180.723 kb on + strand, within CCNA_02036 at 2180.764 kb on + strand, within CCNA_02036 at 2180.771 kb on + strand, within CCNA_02036 at 2180.814 kb on + strand, within CCNA_02036 at 2180.832 kb on - strand, within CCNA_02036 at 2180.832 kb on - strand, within CCNA_02036 at 2180.858 kb on + strand, within CCNA_02036 at 2180.864 kb on + strand, within CCNA_02036 at 2180.866 kb on - strand, within CCNA_02036 at 2180.866 kb on - strand, within CCNA_02036 at 2180.943 kb on - strand at 2180.987 kb on + strand at 2180.987 kb on + strand at 2180.987 kb on + strand at 2180.995 kb on - strand at 2181.113 kb on + strand at 2181.139 kb on + strand at 2181.147 kb on - strand at 2181.184 kb on - strand at 2181.191 kb on - strand at 2181.218 kb on + strand at 2181.226 kb on - strand at 2181.230 kb on + strand at 2181.279 kb on + strand at 2181.289 kb on + strand at 2181.294 kb on - strand at 2181.349 kb on - strand, within CCNA_02037 at 2181.416 kb on - strand, within CCNA_02037 at 2181.422 kb on - strand, within CCNA_02037 at 2181.559 kb on - strand, within CCNA_02037 at 2181.684 kb on - strand, within CCNA_02037 at 2181.812 kb on - strand, within CCNA_02037 at 2182.164 kb on - strand, within CCNA_02037 at 2182.319 kb on - strand, within CCNA_02037 at 2182.343 kb on - strand, within CCNA_02037 at 2182.343 kb on - strand, within CCNA_02037 at 2182.404 kb on - strand, within CCNA_02037 at 2182.404 kb on - strand, within CCNA_02037 at 2182.476 kb on - strand, within CCNA_02037 at 2182.476 kb on - strand, within CCNA_02037 at 2182.508 kb on - strand, within CCNA_02037 at 2182.545 kb on - strand, within CCNA_02037 at 2182.569 kb on - strand, within CCNA_02037 at 2182.628 kb on - strand, within CCNA_02037 at 2182.809 kb on - strand, within CCNA_02037 at 2182.853 kb on - strand, within CCNA_02037 at 2182.899 kb on - strand, within CCNA_02037 at 2183.098 kb on + strand, within CCNA_02037 at 2183.106 kb on - strand, within CCNA_02037 at 2183.186 kb on - strand, within CCNA_02037 at 2183.385 kb on - strand at 2183.480 kb on - strand at 2183.502 kb on - strand at 2183.524 kb on + strand at 2183.537 kb on - strand at 2183.557 kb on - strand at 2183.565 kb on + strand at 2183.570 kb on + strand at 2183.621 kb on - strand at 2183.623 kb on - strand at 2183.623 kb on - strand at 2183.623 kb on - strand at 2183.623 kb on - strand at 2183.623 kb on - strand at 2183.655 kb on + strand at 2183.673 kb on + strand at 2183.774 kb on - strand at 2183.774 kb on - strand at 2183.800 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Spectinomycin 0.08 mg/ml remove 2,180,141 - -2.4 2,180,141 - -0.7 2,180,265 - -0.1 2,180,271 + +1.2 2,180,296 + -0.4 2,180,392 - -2.1 2,180,394 + +2.3 2,180,394 + -0.8 2,180,394 + -0.5 2,180,402 - +0.2 2,180,470 + -2.3 2,180,471 - +1.4 2,180,471 - +0.7 2,180,501 - CCNA_R0047 0.43 -0.2 2,180,515 - CCNA_R0047 0.61 -0.3 2,180,521 + CCNA_R0047 0.69 -0.6 2,180,521 + CCNA_R0047 0.69 +0.3 2,180,521 + CCNA_R0047 0.69 -0.2 2,180,521 + CCNA_R0047 0.69 -1.4 2,180,540 + -0.8 2,180,542 + +0.7 2,180,668 + +1.8 2,180,668 + +0.4 2,180,668 + -2.2 2,180,676 - +0.8 2,180,699 + CCNA_02036 0.18 -2.2 2,180,723 + CCNA_02036 0.26 +0.6 2,180,764 + CCNA_02036 0.41 +0.6 2,180,771 + CCNA_02036 0.43 +1.4 2,180,814 + CCNA_02036 0.59 -0.8 2,180,832 - CCNA_02036 0.65 +0.8 2,180,832 - CCNA_02036 0.65 +0.7 2,180,858 + CCNA_02036 0.75 +0.1 2,180,864 + CCNA_02036 0.77 +0.5 2,180,866 - CCNA_02036 0.77 +0.3 2,180,866 - CCNA_02036 0.77 -0.0 2,180,943 - +0.4 2,180,987 + -0.5 2,180,987 + +0.7 2,180,987 + -0.2 2,180,995 - +2.5 2,181,113 + -1.7 2,181,139 + +0.3 2,181,147 - +0.9 2,181,184 - +1.2 2,181,191 - +2.5 2,181,218 + +1.3 2,181,226 - +2.2 2,181,230 + +0.3 2,181,279 + +1.1 2,181,289 + +1.5 2,181,294 - +2.3 2,181,349 - CCNA_02037 0.12 +2.6 2,181,416 - CCNA_02037 0.14 +3.0 2,181,422 - CCNA_02037 0.15 +2.9 2,181,559 - CCNA_02037 0.20 +3.5 2,181,684 - CCNA_02037 0.26 +2.4 2,181,812 - CCNA_02037 0.31 +2.9 2,182,164 - CCNA_02037 0.46 +2.6 2,182,319 - CCNA_02037 0.52 +2.9 2,182,343 - CCNA_02037 0.53 +1.8 2,182,343 - CCNA_02037 0.53 +2.5 2,182,404 - CCNA_02037 0.56 +3.1 2,182,404 - CCNA_02037 0.56 +2.8 2,182,476 - CCNA_02037 0.58 +2.2 2,182,476 - CCNA_02037 0.58 +1.3 2,182,508 - CCNA_02037 0.60 +2.0 2,182,545 - CCNA_02037 0.61 +1.5 2,182,569 - CCNA_02037 0.62 +2.8 2,182,628 - CCNA_02037 0.65 +1.5 2,182,809 - CCNA_02037 0.72 +2.1 2,182,853 - CCNA_02037 0.74 +3.3 2,182,899 - CCNA_02037 0.76 +3.2 2,183,098 + CCNA_02037 0.84 +1.6 2,183,106 - CCNA_02037 0.85 +1.7 2,183,186 - CCNA_02037 0.88 +1.8 2,183,385 - +2.1 2,183,480 - -1.0 2,183,502 - +0.7 2,183,524 + +0.0 2,183,537 - +0.5 2,183,557 - +0.8 2,183,565 + +1.2 2,183,570 + +0.8 2,183,621 - +0.2 2,183,623 - -0.9 2,183,623 - -0.7 2,183,623 - +0.5 2,183,623 - -0.4 2,183,623 - +1.5 2,183,655 + -1.5 2,183,673 + -0.5 2,183,774 - -0.4 2,183,774 - +0.2 2,183,800 - -0.3
Or see this region's nucleotide sequence