Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01697

Experiment: PYE with Spectinomycin 0.08 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Spectinomycin 0.08 mg/ml
1,827,536	-		CCNA_01696	0.44	-0.7
1,827,545	-		CCNA_01696	0.45	-0.7
1,827,545	-		CCNA_01696	0.45	+1.0
1,827,577	-		CCNA_01696	0.47	-1.5
1,827,606	+		CCNA_01696	0.48	-0.0
1,827,674	-		CCNA_01696	0.52	+0.0
1,827,712	+		CCNA_01696	0.55	+0.3
1,827,762	-		CCNA_01696	0.58	+0.9
1,827,804	-		CCNA_01696	0.60	-0.2
1,827,857	-		CCNA_01696	0.63	+1.3
1,827,873	-		CCNA_01696	0.64	-0.6
1,827,899	+		CCNA_01696	0.66	+1.1
1,827,899	+		CCNA_01696	0.66	-1.6
1,827,904	+		CCNA_01696	0.66	+0.0
1,827,907	-		CCNA_01696	0.66	+0.6
1,827,907	-		CCNA_01696	0.66	-0.2
1,827,907	-		CCNA_01696	0.66	+0.5
1,827,907	-		CCNA_01696	0.66	-0.4
1,827,927	+		CCNA_01696	0.68	-0.4
1,827,935	-		CCNA_01696	0.68	-0.5
1,827,935	-		CCNA_01696	0.68	+0.6
1,827,988	+		CCNA_01696	0.71	+2.3
1,827,988	+		CCNA_01696	0.71	-1.9
1,827,988	+		CCNA_01696	0.71	-0.1
1,827,988	+		CCNA_01696	0.71	-1.0
1,827,988	+		CCNA_01696	0.71	-0.6
1,827,996	-		CCNA_01696	0.72	+2.3
1,827,998	+		CCNA_01696	0.72	-0.3
1,828,001	-		CCNA_01696	0.72	-0.0
1,828,047	-		CCNA_01696	0.75	-0.5
1,828,054	-		CCNA_01696	0.75	+1.7
1,828,162	+		CCNA_01696	0.82	-0.2
1,828,175	+		CCNA_01696	0.82	-1.2
1,828,175	+		CCNA_01696	0.82	+0.6
1,828,183	+		CCNA_01696	0.83	+0.1
1,828,183	-		CCNA_01696	0.83	-0.2
1,828,183	-		CCNA_01696	0.83	+2.0
1,828,191	-		CCNA_01696	0.83	+2.0
1,828,201	+				+1.1
1,828,202	-		CCNA_01696	0.84	-0.4
1,828,216	+		CCNA_01696	0.85	-0.1
1,828,219	-		CCNA_01696	0.85	-1.4
1,828,219	-		CCNA_01696	0.85	+0.9
1,828,228	+		CCNA_01696	0.86	-2.5
1,828,241	-		CCNA_01696	0.86	+0.7
1,828,288	+		CCNA_01696	0.89	-0.6
1,828,344	+				-0.0
1,828,352	-				-1.3
1,828,352	-				+0.4
1,828,413	+				+1.1
1,828,424	-				-0.0
1,828,428	+				-0.3
1,828,430	+				-1.1
1,828,430	+				-0.3
1,828,440	-				+1.5
1,828,495	+				-1.5
1,828,503	-				+1.5
1,828,517	+				+0.3
1,828,517	+				+0.5
1,828,525	-				+1.5
1,828,564	+				-0.5
1,828,572	-				+0.0
1,828,588	+				-1.1
1,828,602	-				+2.3
1,828,609	+				+2.0
1,828,642	+		CCNA_01697	0.11	-1.3
1,828,644	+		CCNA_01697	0.11	-0.4
1,828,693	+		CCNA_01697	0.15	+0.4
1,828,693	+		CCNA_01697	0.15	+1.0
1,828,701	-		CCNA_01697	0.16	-1.0
1,828,701	-		CCNA_01697	0.16	+1.3
1,828,701	-		CCNA_01697	0.16	-0.7
1,828,769	+		CCNA_01697	0.22	-2.0
1,828,769	+		CCNA_01697	0.22	+1.1
1,828,769	+		CCNA_01697	0.22	-0.4
1,828,777	-		CCNA_01697	0.23	-0.7
1,828,778	+		CCNA_01697	0.23	+1.6
1,828,818	+		CCNA_01697	0.26	-1.5
1,828,857	+		CCNA_01697	0.30	+0.0
1,828,857	+		CCNA_01697	0.30	-0.9
1,828,865	-		CCNA_01697	0.31	-0.5
1,828,870	-		CCNA_01697	0.31	-0.1
1,828,966	-		CCNA_01697	0.40	-0.8
1,829,012	-		CCNA_01697	0.44	-0.4
1,829,034	+		CCNA_01697	0.46	-0.6
1,829,071	+		CCNA_01697	0.49	+0.5
1,829,109	-		CCNA_01697	0.52	-0.3
1,829,158	+		CCNA_01697	0.57	-0.6
1,829,171	-		CCNA_01697	0.58	+0.0
1,829,192	-		CCNA_01697	0.60	-1.1
1,829,217	+		CCNA_01697	0.62	+0.4
1,829,225	-		CCNA_01697	0.63	+0.3
1,829,249	+		CCNA_01697	0.65	-1.2
1,829,273	-		CCNA_01697	0.67	-0.7
1,829,290	-		CCNA_01697	0.68	+1.3
1,829,290	-		CCNA_01697	0.68	+1.0
1,829,295	-		CCNA_01697	0.69	-0.0
1,829,325	+		CCNA_01697	0.72	+2.0
1,829,325	+		CCNA_01697	0.72	+1.5
1,829,333	-		CCNA_01697	0.72	+0.2
1,829,333	-		CCNA_01697	0.72	-1.9
1,829,338	-		CCNA_01697	0.73	+1.5
1,829,343	-		CCNA_01697	0.73	+1.3
1,829,361	-		CCNA_01697	0.75	+0.2
1,829,410	+		CCNA_01697	0.79	-0.9
1,829,477	-		CCNA_01697	0.85	+0.6
1,829,500	-		CCNA_01697	0.87	-0.2
1,829,536	+				-1.1
1,829,536	+				-0.0
1,829,544	-				-0.0
1,829,544	-				+1.3
1,829,576	+				+1.5
1,829,584	-				-0.2
1,829,584	-				+0.6
1,829,608	-				+0.1
1,829,617	+				+1.1
1,829,618	+				+1.1
1,829,625	-				+0.2
1,829,625	-				-0.3
1,829,648	+				-1.2
1,829,653	+				+0.2
1,829,675	+				-0.0
1,829,675	+				+0.0
1,829,683	-				-0.6
1,829,745	+				-2.3
1,829,803	+				+0.8
1,829,803	+				-0.8
1,829,803	+				+2.7
1,829,805	-				+0.8
1,829,931	+		CCNA_01698	0.25	+0.5
1,829,979	+		CCNA_01698	0.32	+0.3
1,829,994	-		CCNA_01698	0.33	+0.7
1,830,047	+		CCNA_01698	0.40	+2.7
1,830,085	+		CCNA_01698	0.45	-0.3
1,830,141	+		CCNA_01698	0.52	-1.1
1,830,141	+		CCNA_01698	0.52	-1.4
1,830,149	-		CCNA_01698	0.53	+1.3
1,830,198	+		CCNA_01698	0.59	+1.3
1,830,226	+		CCNA_01698	0.63	-0.6
1,830,234	-		CCNA_01698	0.64	+0.2
1,830,259	+		CCNA_01698	0.67	+0.0
1,830,276	+		CCNA_01698	0.69	-1.7
1,830,320	+		CCNA_01698	0.75	-0.1
1,830,337	+		CCNA_01698	0.77	-1.7
1,830,345	-		CCNA_01698	0.78	-0.7
1,830,350	+		CCNA_01698	0.79	+0.9
1,830,363	+		CCNA_01698	0.80	+0.1
1,830,371	-		CCNA_01698	0.81	+0.4
1,830,381	-		CCNA_01698	0.83	-1.3
1,830,418	-		CCNA_01698	0.87	-0.3
1,830,433	-		CCNA_01698	0.89	-0.4
1,830,510	+				-0.5
1,830,525	-				+0.2
1,830,525	-				-0.3
1,830,527	+				-1.7
1,830,532	+				-0.3
1,830,532	+				+0.4
1,830,571	-				+0.8
1,830,573	+				+0.7
1,830,591	-				+0.5