Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01664

Experiment: PYE with Spectinomycin 0.08 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Spectinomycin 0.08 mg/ml
1,783,407	+		CCNA_01663	0.44	-1.1
1,783,416	+		CCNA_01663	0.45	-0.8
1,783,443	+		CCNA_01663	0.46	-1.2
1,783,443	+		CCNA_01663	0.46	-0.3
1,783,443	+		CCNA_01663	0.46	+0.3
1,783,451	-		CCNA_01663	0.47	+0.6
1,783,609	-		CCNA_01663	0.56	-0.2
1,783,625	+		CCNA_01663	0.57	-0.6
1,783,627	-		CCNA_01663	0.57	-0.5
1,783,635	-		CCNA_01663	0.57	-0.0
1,783,661	+		CCNA_01663	0.59	-0.2
1,783,743	+		CCNA_01663	0.64	+0.2
1,783,767	+		CCNA_01663	0.65	-1.5
1,783,821	+		CCNA_01663	0.68	-1.8
1,783,840	+		CCNA_01663	0.69	-0.3
1,783,991	-		CCNA_01663	0.78	+1.2
1,784,029	-		CCNA_01663	0.80	-1.1
1,784,038	-		CCNA_01663	0.81	-0.0
1,784,038	-		CCNA_01663	0.81	-0.6
1,784,038	-		CCNA_01663	0.81	-1.0
1,784,055	+		CCNA_01663	0.82	+0.3
1,784,055	+		CCNA_01663	0.82	+1.4
1,784,063	-		CCNA_01663	0.82	-1.1
1,784,130	+		CCNA_01663	0.86	+0.3
1,784,160	+		CCNA_01663	0.88	-1.3
1,784,160	+		CCNA_01663	0.88	-1.1
1,784,168	-		CCNA_01663	0.89	-0.1
1,784,189	-		CCNA_01663	0.90	-0.7
1,784,192	+				-0.3
1,784,192	+				-0.4
1,784,220	+				-0.5
1,784,266	+				+0.5
1,784,289	-				+0.9
1,784,335	-				+0.7
1,784,335	-				+0.4
1,784,364	+				+0.6
1,784,364	+				+0.9
1,784,365	-				-0.8
1,784,382	+				+0.1
1,784,399	+				+0.6
1,784,412	-				-1.1
1,784,431	+				-2.3
1,784,431	+				+1.4
1,784,441	+				+0.0
1,784,441	+				+0.5
1,784,449	-				+0.6
1,784,449	-				+0.9
1,784,449	-				-1.5
1,784,464	+				+0.7
1,784,475	+				-1.1
1,784,475	+				-1.6
1,784,483	-				-0.5
1,784,483	-				+1.9
1,784,504	+				+1.9
1,784,512	-				-0.1
1,784,564	+				-0.8
1,784,662	-		CCNA_01664	0.14	-0.4
1,784,739	-		CCNA_01664	0.18	-2.1
1,784,769	+		CCNA_01664	0.19	+0.2
1,784,848	-		CCNA_01664	0.23	-1.0
1,784,848	-		CCNA_01664	0.23	-0.6
1,784,848	-		CCNA_01664	0.23	+1.9
1,784,918	+		CCNA_01664	0.26	-1.0
1,784,926	-		CCNA_01664	0.27	-0.7
1,784,943	+		CCNA_01664	0.28	+0.6
1,784,951	-		CCNA_01664	0.28	-0.8
1,784,951	-		CCNA_01664	0.28	-0.7
1,784,980	+		CCNA_01664	0.29	-0.9
1,785,013	+		CCNA_01664	0.31	+0.0
1,785,075	+		CCNA_01664	0.34	+0.0
1,785,080	+		CCNA_01664	0.34	-0.5
1,785,101	+		CCNA_01664	0.35	-0.5
1,785,109	-		CCNA_01664	0.36	+1.6
1,785,118	-		CCNA_01664	0.36	+0.2
1,785,127	+		CCNA_01664	0.36	-1.5
1,785,161	+		CCNA_01664	0.38	+2.2
1,785,169	+		CCNA_01664	0.39	+0.9
1,785,185	-		CCNA_01664	0.39	-1.4
1,785,262	-		CCNA_01664	0.43	-0.2
1,785,271	-		CCNA_01664	0.43	-0.4
1,785,321	-		CCNA_01664	0.46	-0.8
1,785,359	-		CCNA_01664	0.48	+0.1
1,785,412	-		CCNA_01664	0.50	+0.9
1,785,442	-		CCNA_01664	0.52	-0.8
1,785,482	-		CCNA_01664	0.54	+0.4
1,785,529	-		CCNA_01664	0.56	-1.5
1,785,565	+		CCNA_01664	0.58	-0.9
1,785,605	-		CCNA_01664	0.60	+0.8
1,785,610	+		CCNA_01664	0.60	+2.6
1,785,619	-		CCNA_01664	0.60	+0.3
1,785,619	-		CCNA_01664	0.60	-0.5
1,785,619	-		CCNA_01664	0.60	+0.6
1,785,696	+		CCNA_01664	0.64	-0.7
1,785,708	+		CCNA_01664	0.65	+0.3
1,785,718	+		CCNA_01664	0.65	+1.6
1,785,726	-		CCNA_01664	0.66	-0.1
1,785,726	-		CCNA_01664	0.66	-0.0
1,785,739	-		CCNA_01664	0.66	+2.9
1,785,741	+		CCNA_01664	0.66	-1.1
1,785,749	-		CCNA_01664	0.67	-0.3
1,785,764	-		CCNA_01664	0.67	+0.6
1,785,771	+		CCNA_01664	0.68	-0.6
1,785,771	+		CCNA_01664	0.68	-1.0
1,785,771	+		CCNA_01664	0.68	+0.5
1,785,776	+		CCNA_01664	0.68	-0.3
1,785,776	+		CCNA_01664	0.68	+2.0
1,785,776	+		CCNA_01664	0.68	+0.4
1,785,776	+		CCNA_01664	0.68	-1.2
1,785,776	+		CCNA_01664	0.68	-0.2
1,785,784	-		CCNA_01664	0.68	-0.8
1,785,784	-		CCNA_01664	0.68	-0.1
1,785,784	-		CCNA_01664	0.68	-0.2
1,785,788	+		CCNA_01664	0.69	-0.8
1,785,796	-		CCNA_01664	0.69	-1.0
1,785,796	-		CCNA_01664	0.69	-0.4
1,785,882	+		CCNA_01664	0.73	+0.4
1,785,900	-		CCNA_01664	0.74	+1.0
1,785,905	-		CCNA_01664	0.74	+0.1
1,785,907	+		CCNA_01664	0.74	+1.9
1,785,915	-		CCNA_01664	0.75	-1.2
1,785,915	-		CCNA_01664	0.75	-0.6
1,785,915	-		CCNA_01664	0.75	+0.8
1,785,964	+		CCNA_01664	0.77	+0.9
1,785,986	+		CCNA_01664	0.78	-3.2
1,786,106	+		CCNA_01664	0.84	+2.2
1,786,114	-		CCNA_01664	0.84	-0.6
1,786,114	-		CCNA_01664	0.84	-0.6
1,786,139	+		CCNA_01664	0.86	-0.9
1,786,139	+		CCNA_01664	0.86	+1.4
1,786,147	-		CCNA_01664	0.86	-0.2
1,786,219	-		CCNA_01664	0.89	+1.9
1,786,229	-		CCNA_01664	0.90	+0.0
1,786,269	+				+0.1
1,786,288	+				-0.3
1,786,297	-				-0.2
1,786,297	-				+0.3
1,786,307	-				+0.9
1,786,341	-				-0.0
1,786,344	+				+0.6
1,786,360	-				+0.0
1,786,397	-				-1.1
1,786,426	-				+0.2
1,786,432	-				-1.1
1,786,461	-				+1.0
1,786,467	+				-0.9
1,786,525	+		CCNA_01665	0.10	+0.3
1,786,533	-		CCNA_01665	0.12	-1.3
1,786,550	-		CCNA_01665	0.15	+0.3
1,786,574	-		CCNA_01665	0.19	+0.2
1,786,620	+		CCNA_01665	0.26	-0.8
1,786,625	+		CCNA_01665	0.27	-0.9
1,786,639	+		CCNA_01665	0.30	+1.9
1,786,659	+		CCNA_01665	0.33	-1.1
1,786,668	-		CCNA_01665	0.35	-0.4
1,786,672	+		CCNA_01665	0.35	+0.7
1,786,721	+		CCNA_01665	0.43	+0.1
1,786,756	+		CCNA_01665	0.49	+0.7
1,786,756	+		CCNA_01665	0.49	-1.0
1,786,820	+		CCNA_01665	0.60	+0.4
1,786,983	+		CCNA_01665	0.88	+0.8
1,786,990	+		CCNA_01665	0.89	+0.7
1,786,997	+				-0.7
1,786,997	+				+0.4
1,786,997	+				+0.1
1,787,005	-				-0.3
1,787,084	+				-0.4
1,787,103	-				-0.8
1,787,164	+				-1.2
1,787,191	+				-1.1
1,787,199	+				-0.7
1,787,287	-				-1.0
1,787,348	+		CCNA_01666	0.11	+0.5
1,787,352	-		CCNA_01666	0.11	-0.1
1,787,386	+		CCNA_01666	0.12	-0.5
1,787,405	-		CCNA_01666	0.13	+0.6