Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01516

Experiment: PYE with Spectinomycin 0.08 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Spectinomycin 0.08 mg/ml
1,624,791	+		CCNA_01515	0.37	+1.2
1,624,886	+		CCNA_01515	0.45	+0.4
1,625,051	+		CCNA_01515	0.58	-0.0
1,625,051	+		CCNA_01515	0.58	+1.6
1,625,051	+		CCNA_01515	0.58	-0.3
1,625,051	+		CCNA_01515	0.58	-0.9
1,625,051	+		CCNA_01515	0.58	+1.0
1,625,051	+		CCNA_01515	0.58	+3.2
1,625,059	-		CCNA_01515	0.58	-0.7
1,625,059	-		CCNA_01515	0.58	-0.1
1,625,071	+		CCNA_01515	0.59	-1.3
1,625,112	-		CCNA_01515	0.62	+1.0
1,625,130	+		CCNA_01515	0.64	-0.2
1,625,130	+		CCNA_01515	0.64	-1.1
1,625,138	-		CCNA_01515	0.64	+0.8
1,625,138	-		CCNA_01515	0.64	+1.2
1,625,138	-		CCNA_01515	0.64	-0.0
1,625,176	+		CCNA_01515	0.67	+0.2
1,625,275	+		CCNA_01515	0.75	+0.5
1,625,275	+		CCNA_01515	0.75	-0.4
1,625,283	-		CCNA_01515	0.76	+0.1
1,625,308	+		CCNA_01515	0.78	+1.0
1,625,375	-		CCNA_01515	0.83	+0.4
1,625,387	-		CCNA_01515	0.84	-1.3
1,625,416	-		CCNA_01515	0.86	+0.8
1,625,433	+		CCNA_01515	0.87	-0.9
1,625,440	+		CCNA_01515	0.88	-0.1
1,625,448	-		CCNA_01515	0.89	-1.6
1,625,474	+				+0.9
1,625,479	+				+0.2
1,625,482	-				-0.2
1,625,482	-				-0.1
1,625,482	-				-1.0
1,625,482	-				-0.7
1,625,510	-				-0.5
1,625,510	-				-0.8
1,625,515	+				-0.8
1,625,528	-				+0.2
1,625,548	+				-0.4
1,625,565	+				-0.7
1,625,573	-				+0.2
1,625,573	-				+2.2
1,625,574	+				+0.8
1,625,574	+				+1.9
1,625,642	-				-0.5
1,625,651	+				-0.0
1,625,651	+				-0.2
1,625,660	+				-0.8
1,625,660	+				+0.1
1,625,660	+				+2.2
1,625,660	+				-0.6
1,625,660	+				+0.4
1,625,668	-				-0.0
1,625,706	+				+1.0
1,625,714	+				+1.6
1,625,719	+				-1.0
1,625,719	+				+0.4
1,625,719	+				-0.3
1,625,719	+				-0.4
1,625,719	+				-0.2
1,625,719	+				+1.6
1,625,719	+				+1.3
1,625,727	-				-0.5
1,625,727	-				-0.1
1,625,727	-				+0.9
1,625,727	-				+0.5
1,625,727	-				-0.8
1,625,727	-				-0.5
1,625,773	+				-1.5
1,625,781	-				-1.6
1,625,847	+		CCNA_01516	0.11	+0.0
1,625,910	-		CCNA_01516	0.21	+0.0
1,625,929	-		CCNA_01516	0.24	-2.1
1,625,936	-		CCNA_01516	0.25	-0.9
1,625,943	-		CCNA_01516	0.26	-0.3
1,625,967	-		CCNA_01516	0.30	-0.1
1,625,969	+		CCNA_01516	0.30	+1.4
1,625,977	-		CCNA_01516	0.31	-1.9
1,625,984	+		CCNA_01516	0.32	-0.5
1,626,006	+		CCNA_01516	0.36	+0.9
1,626,014	-		CCNA_01516	0.37	-1.5
1,626,118	-		CCNA_01516	0.53	+0.2
1,626,118	-		CCNA_01516	0.53	-1.0
1,626,151	+		CCNA_01516	0.59	-0.6
1,626,163	+		CCNA_01516	0.61	-0.7
1,626,167	+		CCNA_01516	0.61	-0.0
1,626,167	+		CCNA_01516	0.61	-0.9
1,626,198	-		CCNA_01516	0.66	-0.8
1,626,212	+		CCNA_01516	0.68	+0.1
1,626,217	+		CCNA_01516	0.69	-1.2
1,626,231	+		CCNA_01516	0.71	-0.2
1,626,231	+		CCNA_01516	0.71	-0.4
1,626,232	-		CCNA_01516	0.71	-0.2
1,626,268	-		CCNA_01516	0.77	+1.2
1,626,299	+		CCNA_01516	0.82	-0.8
1,626,301	-		CCNA_01516	0.82	-2.4
1,626,329	-		CCNA_01516	0.87	+1.2
1,626,336	+		CCNA_01516	0.88	-1.2
1,626,344	-		CCNA_01516	0.89	-1.1
1,626,354	+				+0.8
1,626,514	+				+0.3
1,626,514	+				-0.2
1,626,521	+				+0.8
1,626,527	-				-0.5
1,626,529	-				-1.4
1,626,554	-				+0.5
1,626,584	-				+0.0
1,626,659	+		CCNA_01517	0.11	-1.6
1,626,667	-		CCNA_01517	0.12	-0.8
1,626,674	-		CCNA_01517	0.12	-0.7
1,626,688	+		CCNA_01517	0.14	+0.8
1,626,742	-		CCNA_01517	0.19	-0.1
1,626,742	-		CCNA_01517	0.19	-0.5
1,626,746	+		CCNA_01517	0.19	+0.8
1,626,772	-		CCNA_01517	0.22	+0.3
1,626,778	-		CCNA_01517	0.22	+0.2
1,626,793	+		CCNA_01517	0.24	+0.5
1,626,801	-		CCNA_01517	0.25	-0.4
1,626,803	+		CCNA_01517	0.25	+0.7
1,626,806	-		CCNA_01517	0.25	+0.1
1,626,826	-		CCNA_01517	0.27	-0.6
1,626,831	-		CCNA_01517	0.28	-0.6
1,626,834	+		CCNA_01517	0.28	-0.6
1,626,958	+		CCNA_01517	0.40	-1.0
1,626,976	+		CCNA_01517	0.42	-0.1
1,627,024	+		CCNA_01517	0.46	-0.6
1,627,027	-		CCNA_01517	0.47	-1.7
1,627,031	+		CCNA_01517	0.47	+0.8
1,627,039	-		CCNA_01517	0.48	+0.1
1,627,039	-		CCNA_01517	0.48	-0.4
1,627,039	-		CCNA_01517	0.48	-1.1
1,627,039	-		CCNA_01517	0.48	+0.0
1,627,079	-		CCNA_01517	0.52	+0.1
1,627,092	-		CCNA_01517	0.53	+0.1
1,627,101	+		CCNA_01517	0.54	-3.5
1,627,119	-		CCNA_01517	0.55	-1.1
1,627,132	+		CCNA_01517	0.57	+0.1
1,627,171	-		CCNA_01517	0.61	+1.1
1,627,292	+		CCNA_01517	0.72	+2.6
1,627,293	+		CCNA_01517	0.72	-2.2
1,627,293	+		CCNA_01517	0.72	+1.1
1,627,300	-		CCNA_01517	0.73	+0.4
1,627,300	-		CCNA_01517	0.73	+2.4
1,627,300	-		CCNA_01517	0.73	+0.4
1,627,300	-		CCNA_01517	0.73	+0.4
1,627,300	-		CCNA_01517	0.73	-0.2
1,627,301	-		CCNA_01517	0.73	-1.9
1,627,301	-		CCNA_01517	0.73	+0.7
1,627,301	-		CCNA_01517	0.73	+0.9
1,627,308	+		CCNA_01517	0.74	-1.0
1,627,311	-		CCNA_01517	0.74	-0.5
1,627,316	-		CCNA_01517	0.75	+0.2
1,627,318	+		CCNA_01517	0.75	-1.0
1,627,349	+		CCNA_01517	0.78	-0.5
1,627,368	-		CCNA_01517	0.80	-1.5
1,627,378	+		CCNA_01517	0.81	-2.3