Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01444

Experiment: PYE with Spectinomycin 0.08 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Spectinomycin 0.08 mg/ml
1,554,624	+				+1.6
1,554,853	+				+1.9
1,554,853	+				+1.6
1,554,853	+				+2.2
1,554,856	+				+0.9
1,554,864	-				+0.1
1,554,864	-				+0.0
1,554,892	-				-0.2
1,554,907	+				+1.3
1,554,925	+				+0.5
1,554,933	-		CCNA_01443	0.10	+0.4
1,554,992	+		CCNA_01443	0.19	+0.0
1,555,000	-		CCNA_01443	0.21	-0.1
1,555,098	-		CCNA_01443	0.36	+0.1
1,555,170	-		CCNA_01443	0.48	-0.6
1,555,172	-		CCNA_01443	0.48	+0.1
1,555,220	-		CCNA_01443	0.55	-1.3
1,555,282	+		CCNA_01443	0.65	+0.4
1,555,292	-		CCNA_01443	0.67	+0.9
1,555,304	+		CCNA_01443	0.69	+0.6
1,555,435	-		CCNA_01443	0.89	+1.6
1,555,469	+				-0.4
1,555,469	+				-0.7
1,555,469	+				-0.1
1,555,469	+				-0.6
1,555,469	+				-0.5
1,555,469	+				-0.9
1,555,469	+				+1.2
1,555,471	-				-0.1
1,555,476	-				+0.3
1,555,477	-				+0.5
1,555,477	-				+0.0
1,555,477	-				+0.1
1,555,477	-				+0.2
1,555,477	-				-0.8
1,555,477	-				+0.7
1,555,477	-				+0.5
1,555,477	-				+0.5
1,555,477	-				+0.4
1,555,477	-				+1.1
1,555,477	-				+0.9
1,555,524	-				+0.0
1,555,607	-				+2.2
1,555,639	+				+3.2
1,555,650	+				+1.4
1,555,693	+				+2.6
1,555,701	-				+2.7
1,555,701	-				+2.2
1,555,796	-		CCNA_01444	0.10	+1.7
1,555,856	+		CCNA_01444	0.13	-0.9
1,555,977	-		CCNA_01444	0.19	+3.1
1,555,998	-		CCNA_01444	0.20	+4.3
1,556,013	+		CCNA_01444	0.21	+0.7
1,556,090	-		CCNA_01444	0.25	+2.8
1,556,180	-		CCNA_01444	0.29	+0.7
1,556,188	-		CCNA_01444	0.30	+3.2
1,556,229	-		CCNA_01444	0.32	+2.0
1,556,246	+		CCNA_01444	0.33	+0.5
1,556,269	+		CCNA_01444	0.34	+0.6
1,556,367	+		CCNA_01444	0.39	+1.6
1,556,375	-		CCNA_01444	0.39	+2.8
1,556,395	+		CCNA_01444	0.40	-0.2
1,556,491	-		CCNA_01444	0.45	+2.7
1,556,508	+		CCNA_01444	0.46	-0.1
1,556,511	-		CCNA_01444	0.46	+2.2
1,556,515	+		CCNA_01444	0.46	+3.5
1,556,516	-		CCNA_01444	0.46	+2.9
1,556,540	+		CCNA_01444	0.47	+0.9
1,556,540	+		CCNA_01444	0.47	+1.5
1,556,548	-		CCNA_01444	0.47	-0.1
1,556,548	-		CCNA_01444	0.47	+1.5
1,556,548	-		CCNA_01444	0.47	+0.6
1,556,548	-		CCNA_01444	0.47	+2.4
1,556,713	+		CCNA_01444	0.56	+0.4
1,556,741	-		CCNA_01444	0.57	+1.7
1,556,741	-		CCNA_01444	0.57	+2.6
1,556,744	+		CCNA_01444	0.57	+2.5
1,556,744	+		CCNA_01444	0.57	+0.5
1,556,855	-		CCNA_01444	0.63	+1.9
1,556,855	-		CCNA_01444	0.63	+3.0
1,556,916	-		CCNA_01444	0.66	+2.8
1,557,000	+		CCNA_01444	0.70	+1.4
1,557,008	-		CCNA_01444	0.70	+1.9
1,557,008	-		CCNA_01444	0.70	-0.4
1,557,008	-		CCNA_01444	0.70	+2.5
1,557,256	-		CCNA_01444	0.83	+2.6
1,557,349	-		CCNA_01444	0.87	+2.5
1,557,351	+		CCNA_01444	0.87	+0.9
1,557,359	-		CCNA_01444	0.88	+0.8
1,557,366	+		CCNA_01444	0.88	-0.3
1,557,374	-		CCNA_01444	0.88	+0.1
1,557,462	+				-0.2
1,557,470	-				+0.1
1,557,470	-				+0.7
1,557,471	-				+0.4
1,557,472	+				-0.9
1,557,490	-				-0.1
1,557,510	+				-0.2
1,557,510	+				+1.6
1,557,518	-				-0.3
1,557,518	-				+2.9
1,557,518	-				-0.6
1,557,567	+				+1.0
1,557,598	-				+0.6
1,557,608	+				-0.5
1,557,610	-				+1.2
1,557,611	-				-1.5
1,557,624	+				-0.1
1,557,656	+				-1.0
1,557,684	-				-1.8
1,557,738	-				+0.9
1,557,738	-				-0.3
1,557,796	-		CCNA_01445	0.22	-0.1
1,557,829	+		CCNA_01445	0.30	+0.8
1,557,840	+		CCNA_01445	0.32	+2.4
1,557,840	+		CCNA_01445	0.32	-0.3
1,557,840	+		CCNA_01445	0.32	-0.9
1,557,840	+		CCNA_01445	0.32	-1.3
1,557,840	+		CCNA_01445	0.32	-1.3
1,557,840	+		CCNA_01445	0.32	-1.9
1,557,840	+		CCNA_01445	0.32	+0.2
1,557,840	+		CCNA_01445	0.32	-2.3
1,557,848	-		CCNA_01445	0.34	-1.7
1,557,848	-		CCNA_01445	0.34	+0.4
1,557,848	-		CCNA_01445	0.34	+0.3
1,557,848	-		CCNA_01445	0.34	+0.9
1,557,887	+		CCNA_01445	0.43	-0.9
1,557,915	+		CCNA_01445	0.49	+0.2
1,557,923	-		CCNA_01445	0.51	+0.2
1,557,982	+		CCNA_01445	0.65	-0.9
1,557,984	+		CCNA_01445	0.65	+0.6
1,558,050	-		CCNA_01445	0.80	-1.1
1,558,075	+		CCNA_01445	0.86	+0.4
1,558,081	+		CCNA_01445	0.87	-0.4
1,558,096	+				+0.3
1,558,096	+				+1.2
1,558,114	-				+1.0
1,558,123	+				+0.8
1,558,173	+				+0.3
1,558,248	-				-0.1
1,558,290	-				-1.0
1,558,367	-				-1.9
1,558,381	+		CCNA_01446	0.11	+0.4
1,558,389	-		CCNA_01446	0.12	+0.2
1,558,423	+		CCNA_01446	0.14	+2.4
1,558,434	+		CCNA_01446	0.15	+2.3
1,558,457	+		CCNA_01446	0.17	-0.5
1,558,465	-		CCNA_01446	0.18	-0.1
1,558,473	+		CCNA_01446	0.19	+0.4
1,558,473	+				+1.9
1,558,474	+		CCNA_01446	0.19	-1.2
1,558,482	-		CCNA_01446	0.19	+0.7
1,558,482	-		CCNA_01446	0.19	+0.1
1,558,573	+		CCNA_01446	0.27	+0.5
1,558,576	-		CCNA_01446	0.27	-0.6
1,558,584	+		CCNA_01446	0.28	+0.2
1,558,587	-		CCNA_01446	0.28	-0.9
1,558,588	+		CCNA_01446	0.28	+0.9