Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00091

Experiment: PYE with Spectinomycin 0.08 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00090 and CCNA_00091 are separated by 205 nucleotidesCCNA_00091 and CCNA_00092 overlap by 4 nucleotidesCCNA_00092 and CCNA_00093 are separated by 98 nucleotides CCNA_00090: CCNA_00090 - UDP-glucose 4-epimerase, at 101,960 to 102,943 _00090 CCNA_00091: CCNA_00091 - transporter, drug/metabolite exporter family, at 103,149 to 104,042 _00091 CCNA_00092: CCNA_00092 - short chain dehydrogenase, at 104,039 to 104,929 _00092 CCNA_00093: CCNA_00093 - hypothetical protein, at 105,028 to 105,237 _00093 Position (kb) 103 104 105Strain fitness (log2 ratio) -2 -1 0 1 2 3at 102.177 kb on - strand, within CCNA_00090at 102.177 kb on - strand, within CCNA_00090at 102.201 kb on - strand, within CCNA_00090at 102.224 kb on - strand, within CCNA_00090at 102.228 kb on + strand, within CCNA_00090at 102.260 kb on + strand, within CCNA_00090at 102.268 kb on - strand, within CCNA_00090at 102.281 kb on + strand, within CCNA_00090at 102.294 kb on - strand, within CCNA_00090at 102.340 kb on - strand, within CCNA_00090at 102.388 kb on - strand, within CCNA_00090at 102.441 kb on - strand, within CCNA_00090at 102.466 kb on - strand, within CCNA_00090at 102.524 kb on + strand, within CCNA_00090at 102.525 kb on + strand, within CCNA_00090at 102.526 kb on + strand, within CCNA_00090at 102.527 kb on + strand, within CCNA_00090at 102.545 kb on - strand, within CCNA_00090at 102.593 kb on + strand, within CCNA_00090at 102.593 kb on + strand, within CCNA_00090at 102.600 kb on - strand, within CCNA_00090at 102.605 kb on - strand, within CCNA_00090at 102.613 kb on + strand, within CCNA_00090at 102.613 kb on - strand, within CCNA_00090at 102.613 kb on - strand, within CCNA_00090at 102.636 kb on + strand, within CCNA_00090at 102.644 kb on - strand, within CCNA_00090at 102.723 kb on + strand, within CCNA_00090at 102.726 kb on + strand, within CCNA_00090at 102.728 kb on + strand, within CCNA_00090at 102.728 kb on + strand, within CCNA_00090at 102.736 kb on - strand, within CCNA_00090at 102.736 kb on - strand, within CCNA_00090at 102.799 kb on + strand, within CCNA_00090at 102.799 kb on + strand, within CCNA_00090at 102.799 kb on + strand, within CCNA_00090at 102.799 kb on + strand, within CCNA_00090at 102.799 kb on + strand, within CCNA_00090at 102.807 kb on + strand, within CCNA_00090at 102.812 kb on + strand, within CCNA_00090at 102.834 kb on + strand, within CCNA_00090at 102.859 kb on - strandat 102.926 kb on + strandat 102.926 kb on + strandat 102.926 kb on + strandat 102.951 kb on + strandat 102.951 kb on + strandat 102.951 kb on + strandat 102.951 kb on + strandat 102.951 kb on + strandat 102.956 kb on - strandat 102.958 kb on - strandat 102.959 kb on - strandat 102.959 kb on - strandat 102.959 kb on - strandat 102.970 kb on + strandat 103.052 kb on + strandat 103.146 kb on + strandat 103.170 kb on - strandat 103.198 kb on + strandat 103.198 kb on + strandat 103.206 kb on - strandat 103.206 kb on - strandat 103.208 kb on + strandat 103.208 kb on - strandat 103.216 kb on - strandat 103.216 kb on - strandat 103.226 kb on + strandat 103.261 kb on + strand, within CCNA_00091at 103.269 kb on - strand, within CCNA_00091at 103.296 kb on + strand, within CCNA_00091at 103.342 kb on - strand, within CCNA_00091at 103.401 kb on + strand, within CCNA_00091at 103.430 kb on - strand, within CCNA_00091at 103.459 kb on + strand, within CCNA_00091at 103.478 kb on + strand, within CCNA_00091at 103.483 kb on + strand, within CCNA_00091at 103.491 kb on - strand, within CCNA_00091at 103.491 kb on - strand, within CCNA_00091at 103.491 kb on - strand, within CCNA_00091at 103.519 kb on + strand, within CCNA_00091at 103.550 kb on - strand, within CCNA_00091at 103.568 kb on + strand, within CCNA_00091at 103.580 kb on + strand, within CCNA_00091at 103.586 kb on - strand, within CCNA_00091at 103.586 kb on - strand, within CCNA_00091at 103.586 kb on - strand, within CCNA_00091at 103.586 kb on - strand, within CCNA_00091at 103.586 kb on - strand, within CCNA_00091at 103.589 kb on + strand, within CCNA_00091at 103.607 kb on - strand, within CCNA_00091at 103.632 kb on + strand, within CCNA_00091at 103.653 kb on + strand, within CCNA_00091at 103.656 kb on - strand, within CCNA_00091at 103.671 kb on - strand, within CCNA_00091at 103.676 kb on - strand, within CCNA_00091at 103.697 kb on + strand, within CCNA_00091at 103.697 kb on + strand, within CCNA_00091at 103.705 kb on - strand, within CCNA_00091at 103.705 kb on - strand, within CCNA_00091at 103.705 kb on - strand, within CCNA_00091at 103.715 kb on + strand, within CCNA_00091at 103.728 kb on - strand, within CCNA_00091at 103.747 kb on + strand, within CCNA_00091at 103.788 kb on - strand, within CCNA_00091at 103.789 kb on + strand, within CCNA_00091at 103.797 kb on - strand, within CCNA_00091at 103.849 kb on + strand, within CCNA_00091at 103.916 kb on + strand, within CCNA_00091at 103.923 kb on + strand, within CCNA_00091at 103.931 kb on - strand, within CCNA_00091at 103.957 kb on + strandat 103.975 kb on - strandat 103.979 kb on - strandat 103.991 kb on + strandat 103.999 kb on - strandat 104.024 kb on + strandat 104.024 kb on + strandat 104.024 kb on + strandat 104.032 kb on - strandat 104.032 kb on - strandat 104.032 kb on - strandat 104.032 kb on - strandat 104.032 kb on - strandat 104.044 kb on - strandat 104.140 kb on + strand, within CCNA_00092at 104.148 kb on - strand, within CCNA_00092at 104.148 kb on - strand, within CCNA_00092at 104.155 kb on + strand, within CCNA_00092at 104.155 kb on + strand, within CCNA_00092at 104.163 kb on + strand, within CCNA_00092at 104.194 kb on - strand, within CCNA_00092at 104.225 kb on + strand, within CCNA_00092at 104.228 kb on - strand, within CCNA_00092at 104.374 kb on + strand, within CCNA_00092at 104.382 kb on - strand, within CCNA_00092at 104.388 kb on + strand, within CCNA_00092at 104.409 kb on + strand, within CCNA_00092at 104.466 kb on + strand, within CCNA_00092at 104.466 kb on + strand, within CCNA_00092at 104.474 kb on - strand, within CCNA_00092at 104.479 kb on + strand, within CCNA_00092at 104.551 kb on + strand, within CCNA_00092at 104.594 kb on - strand, within CCNA_00092at 104.604 kb on + strand, within CCNA_00092at 104.604 kb on + strand, within CCNA_00092at 104.612 kb on - strand, within CCNA_00092at 104.629 kb on + strand, within CCNA_00092at 104.637 kb on - strand, within CCNA_00092at 104.669 kb on + strand, within CCNA_00092at 104.710 kb on + strandat 104.710 kb on + strand, within CCNA_00092at 104.711 kb on + strand, within CCNA_00092at 104.718 kb on + strand, within CCNA_00092at 104.720 kb on - strand, within CCNA_00092at 104.720 kb on - strand, within CCNA_00092at 104.726 kb on - strand, within CCNA_00092at 104.726 kb on - strand, within CCNA_00092at 104.745 kb on + strandat 104.745 kb on + strand, within CCNA_00092at 104.763 kb on - strand, within CCNA_00092at 104.770 kb on + strand, within CCNA_00092at 104.770 kb on + strand, within CCNA_00092at 104.778 kb on - strand, within CCNA_00092at 104.785 kb on + strand, within CCNA_00092at 104.785 kb on + strand, within CCNA_00092at 104.793 kb on - strand, within CCNA_00092at 104.823 kb on - strand, within CCNA_00092at 104.832 kb on + strand, within CCNA_00092at 104.854 kb on + strandat 104.862 kb on - strandat 104.893 kb on - strandat 104.920 kb on - strandat 104.944 kb on + strandat 104.946 kb on + strandat 105.001 kb on - strandat 105.020 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Spectinomycin 0.08 mg/ml
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102,177 - CCNA_00090 0.22 +1.1
102,177 - CCNA_00090 0.22 -0.1
102,201 - CCNA_00090 0.24 +0.1
102,224 - CCNA_00090 0.27 +0.4
102,228 + CCNA_00090 0.27 -0.2
102,260 + CCNA_00090 0.30 -0.5
102,268 - CCNA_00090 0.31 +0.1
102,281 + CCNA_00090 0.33 -0.4
102,294 - CCNA_00090 0.34 -0.2
102,340 - CCNA_00090 0.39 -0.9
102,388 - CCNA_00090 0.43 +2.1
102,441 - CCNA_00090 0.49 +0.1
102,466 - CCNA_00090 0.51 -1.1
102,524 + CCNA_00090 0.57 +1.1
102,525 + CCNA_00090 0.57 -0.1
102,526 + CCNA_00090 0.58 -0.1
102,527 + CCNA_00090 0.58 +0.7
102,545 - CCNA_00090 0.59 -1.3
102,593 + CCNA_00090 0.64 -1.7
102,593 + CCNA_00090 0.64 +0.3
102,600 - CCNA_00090 0.65 -0.5
102,605 - CCNA_00090 0.66 -0.1
102,613 + CCNA_00090 0.66 +1.3
102,613 - CCNA_00090 0.66 -0.8
102,613 - CCNA_00090 0.66 +0.8
102,636 + CCNA_00090 0.69 -0.9
102,644 - CCNA_00090 0.70 +0.8
102,723 + CCNA_00090 0.78 +0.6
102,726 + CCNA_00090 0.78 -2.2
102,728 + CCNA_00090 0.78 +0.8
102,728 + CCNA_00090 0.78 -0.5
102,736 - CCNA_00090 0.79 +0.9
102,736 - CCNA_00090 0.79 -0.2
102,799 + CCNA_00090 0.85 -0.2
102,799 + CCNA_00090 0.85 -0.4
102,799 + CCNA_00090 0.85 -0.3
102,799 + CCNA_00090 0.85 -0.4
102,799 + CCNA_00090 0.85 +0.1
102,807 + CCNA_00090 0.86 -0.3
102,812 + CCNA_00090 0.87 +0.1
102,834 + CCNA_00090 0.89 +0.9
102,859 - -1.0
102,926 + +0.5
102,926 + -0.4
102,926 + -2.2
102,951 + -1.4
102,951 + -0.6
102,951 + -0.7
102,951 + +2.1
102,951 + +1.3
102,956 - +0.3
102,958 - -0.9
102,959 - +1.2
102,959 - +0.3
102,959 - +0.8
102,970 + -0.7
103,052 + -1.5
103,146 + +1.4
103,170 - +0.1
103,198 + +0.2
103,198 + -0.7
103,206 - -2.3
103,206 - -0.2
103,208 + -1.2
103,208 - -1.2
103,216 - +0.1
103,216 - -1.7
103,226 + +0.2
103,261 + CCNA_00091 0.13 -1.1
103,269 - CCNA_00091 0.13 +1.1
103,296 + CCNA_00091 0.16 +0.5
103,342 - CCNA_00091 0.22 -1.9
103,401 + CCNA_00091 0.28 +0.2
103,430 - CCNA_00091 0.31 -1.6
103,459 + CCNA_00091 0.35 -2.0
103,478 + CCNA_00091 0.37 -0.2
103,483 + CCNA_00091 0.37 +0.9
103,491 - CCNA_00091 0.38 +1.1
103,491 - CCNA_00091 0.38 -0.6
103,491 - CCNA_00091 0.38 +0.1
103,519 + CCNA_00091 0.41 -0.3
103,550 - CCNA_00091 0.45 -1.5
103,568 + CCNA_00091 0.47 -2.4
103,580 + CCNA_00091 0.48 -0.8
103,586 - CCNA_00091 0.49 -0.8
103,586 - CCNA_00091 0.49 -1.0
103,586 - CCNA_00091 0.49 +0.4
103,586 - CCNA_00091 0.49 -1.9
103,586 - CCNA_00091 0.49 +1.0
103,589 + CCNA_00091 0.49 +0.7
103,607 - CCNA_00091 0.51 -2.2
103,632 + CCNA_00091 0.54 +0.2
103,653 + CCNA_00091 0.56 +0.3
103,656 - CCNA_00091 0.57 +1.6
103,671 - CCNA_00091 0.58 -0.4
103,676 - CCNA_00091 0.59 -2.5
103,697 + CCNA_00091 0.61 -0.2
103,697 + CCNA_00091 0.61 +1.1
103,705 - CCNA_00091 0.62 -2.3
103,705 - CCNA_00091 0.62 -0.4
103,705 - CCNA_00091 0.62 -0.6
103,715 + CCNA_00091 0.63 -1.4
103,728 - CCNA_00091 0.65 -0.9
103,747 + CCNA_00091 0.67 -1.0
103,788 - CCNA_00091 0.71 -0.4
103,789 + CCNA_00091 0.72 -0.1
103,797 - CCNA_00091 0.72 -0.2
103,849 + CCNA_00091 0.78 +0.8
103,916 + CCNA_00091 0.86 -0.6
103,923 + CCNA_00091 0.87 -1.0
103,931 - CCNA_00091 0.87 -0.7
103,957 + +1.3
103,975 - -0.2
103,979 - -2.2
103,991 + -0.7
103,999 - -1.3
104,024 + -1.4
104,024 + -0.7
104,024 + +1.5
104,032 - +0.6
104,032 - +0.1
104,032 - +1.1
104,032 - -0.8
104,032 - +0.7
104,044 - +0.4
104,140 + CCNA_00092 0.11 +0.1
104,148 - CCNA_00092 0.12 +1.2
104,148 - CCNA_00092 0.12 -0.4
104,155 + CCNA_00092 0.13 -1.1
104,155 + CCNA_00092 0.13 +1.5
104,163 + CCNA_00092 0.14 -1.5
104,194 - CCNA_00092 0.17 -2.1
104,225 + CCNA_00092 0.21 +2.1
104,228 - CCNA_00092 0.21 -1.5
104,374 + CCNA_00092 0.38 -0.7
104,382 - CCNA_00092 0.38 -0.8
104,388 + CCNA_00092 0.39 -1.4
104,409 + CCNA_00092 0.42 +0.9
104,466 + CCNA_00092 0.48 +0.1
104,466 + CCNA_00092 0.48 -1.5
104,474 - CCNA_00092 0.49 -0.3
104,479 + CCNA_00092 0.49 +0.3
104,551 + CCNA_00092 0.57 +0.2
104,594 - CCNA_00092 0.62 -1.1
104,604 + CCNA_00092 0.63 +0.8
104,604 + CCNA_00092 0.63 -1.5
104,612 - CCNA_00092 0.64 +2.5
104,629 + CCNA_00092 0.66 -0.8
104,637 - CCNA_00092 0.67 -0.5
104,669 + CCNA_00092 0.71 -0.5
104,710 + +2.1
104,710 + CCNA_00092 0.75 -0.8
104,711 + CCNA_00092 0.75 -1.4
104,718 + CCNA_00092 0.76 +0.3
104,720 - CCNA_00092 0.76 -0.8
104,720 - CCNA_00092 0.76 +0.9
104,726 - CCNA_00092 0.77 -1.2
104,726 - CCNA_00092 0.77 +0.0
104,745 + +3.1
104,745 + CCNA_00092 0.79 -0.9
104,763 - CCNA_00092 0.81 +0.2
104,770 + CCNA_00092 0.82 +0.5
104,770 + CCNA_00092 0.82 -0.7
104,778 - CCNA_00092 0.83 +0.4
104,785 + CCNA_00092 0.84 -2.0
104,785 + CCNA_00092 0.84 +0.9
104,793 - CCNA_00092 0.85 -1.3
104,823 - CCNA_00092 0.88 -1.1
104,832 + CCNA_00092 0.89 -1.5
104,854 + -0.8
104,862 - +0.7
104,893 - -0.5
104,920 - +0.3
104,944 + -0.0
104,946 + +0.3
105,001 - +0.5
105,020 - +1.6

Or see this region's nucleotide sequence