Experiment: PYE with Spectinomycin 0.08 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00018 and CCNA_00019 are separated by 30 nucleotides CCNA_00019 and CCNA_00020 overlap by 4 nucleotides CCNA_00020 and CCNA_03911 overlap by 4 nucleotides CCNA_03911 and CCNA_00021 are separated by 61 nucleotides
CCNA_00018: CCNA_00018 - molybdenum cofactor biosynthesis protein A, at 18,735 to 19,784
_00018
CCNA_00019: CCNA_00019 - molybdopterin-guanine dinucleotide biosynthesis protein A, at 19,815 to 20,447
_00019
CCNA_00020: CCNA_00020 - hypothetical protein, at 20,444 to 20,668
_00020
CCNA_03911: CCNA_03911 - hypothetical protein, at 20,665 to 20,778
_03911
CCNA_00021: CCNA_00021 - putative aerobic-type carbon monoxide dehydrogenase, large subunit CoxL, at 20,840 to 23,032
_00021
Position (kb) 20
21 Strain fitness (log2 ratio) -2
-1
0
1
2 at 19.444 kb on - strand, within CCNA_00018 at 19.528 kb on + strand, within CCNA_00018 at 19.561 kb on - strand, within CCNA_00018 at 19.578 kb on + strand, within CCNA_00018 at 19.586 kb on + strand, within CCNA_00018 at 19.620 kb on + strand, within CCNA_00018 at 19.640 kb on + strand, within CCNA_00018 at 19.708 kb on - strand at 19.732 kb on - strand at 19.902 kb on + strand, within CCNA_00019 at 19.904 kb on + strand, within CCNA_00019 at 19.910 kb on - strand, within CCNA_00019 at 19.937 kb on + strand, within CCNA_00019 at 19.945 kb on - strand, within CCNA_00019 at 20.000 kb on + strand, within CCNA_00019 at 20.046 kb on + strand, within CCNA_00019 at 20.170 kb on - strand, within CCNA_00019 at 20.200 kb on - strand, within CCNA_00019 at 20.239 kb on + strand, within CCNA_00019 at 20.247 kb on - strand, within CCNA_00019 at 20.247 kb on - strand, within CCNA_00019 at 20.336 kb on - strand, within CCNA_00019 at 20.336 kb on - strand, within CCNA_00019 at 20.340 kb on - strand, within CCNA_00019 at 20.355 kb on + strand, within CCNA_00019 at 20.382 kb on - strand, within CCNA_00019 at 20.434 kb on + strand at 20.450 kb on - strand at 20.574 kb on - strand, within CCNA_00020 at 20.590 kb on - strand, within CCNA_00020 at 20.678 kb on - strand, within CCNA_03911 at 20.694 kb on + strand, within CCNA_03911 at 20.697 kb on - strand, within CCNA_03911 at 20.697 kb on - strand, within CCNA_03911 at 20.738 kb on - strand, within CCNA_03911 at 20.740 kb on + strand, within CCNA_03911 at 20.749 kb on + strand, within CCNA_03911 at 20.749 kb on + strand, within CCNA_03911 at 20.754 kb on + strand, within CCNA_03911 at 20.757 kb on - strand, within CCNA_03911 at 20.863 kb on - strand at 20.875 kb on - strand at 20.880 kb on + strand at 20.989 kb on - strand at 21.008 kb on - strand at 21.043 kb on - strand at 21.069 kb on - strand, within CCNA_00021 at 21.069 kb on - strand, within CCNA_00021 at 21.091 kb on + strand, within CCNA_00021 at 21.091 kb on + strand, within CCNA_00021 at 21.091 kb on + strand, within CCNA_00021 at 21.091 kb on + strand, within CCNA_00021 at 21.091 kb on + strand, within CCNA_00021 at 21.091 kb on + strand, within CCNA_00021 at 21.091 kb on + strand, within CCNA_00021 at 21.099 kb on - strand, within CCNA_00021 at 21.108 kb on + strand, within CCNA_00021 at 21.108 kb on + strand, within CCNA_00021 at 21.156 kb on - strand, within CCNA_00021 at 21.201 kb on + strand, within CCNA_00021 at 21.201 kb on + strand, within CCNA_00021 at 21.202 kb on - strand, within CCNA_00021 at 21.208 kb on + strand, within CCNA_00021 at 21.209 kb on - strand, within CCNA_00021 at 21.209 kb on - strand, within CCNA_00021 at 21.209 kb on - strand, within CCNA_00021 at 21.209 kb on - strand, within CCNA_00021 at 21.216 kb on - strand, within CCNA_00021 at 21.280 kb on + strand, within CCNA_00021 at 21.286 kb on + strand, within CCNA_00021 at 21.291 kb on + strand, within CCNA_00021 at 21.299 kb on - strand, within CCNA_00021 at 21.299 kb on - strand, within CCNA_00021 at 21.299 kb on - strand, within CCNA_00021 at 21.299 kb on - strand, within CCNA_00021 at 21.299 kb on - strand, within CCNA_00021 at 21.306 kb on + strand, within CCNA_00021 at 21.306 kb on + strand, within CCNA_00021 at 21.316 kb on - strand, within CCNA_00021 at 21.316 kb on - strand, within CCNA_00021 at 21.369 kb on + strand, within CCNA_00021 at 21.410 kb on + strand, within CCNA_00021 at 21.466 kb on - strand, within CCNA_00021 at 21.497 kb on - strand, within CCNA_00021 at 21.514 kb on + strand, within CCNA_00021 at 21.565 kb on - strand, within CCNA_00021 at 21.565 kb on - strand, within CCNA_00021 at 21.565 kb on - strand, within CCNA_00021 at 21.565 kb on - strand, within CCNA_00021 at 21.598 kb on + strand, within CCNA_00021 at 21.598 kb on - strand, within CCNA_00021 at 21.642 kb on + strand, within CCNA_00021 at 21.650 kb on - strand, within CCNA_00021 at 21.650 kb on - strand, within CCNA_00021
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Spectinomycin 0.08 mg/ml remove 19,444 - CCNA_00018 0.68 +0.6 19,528 + CCNA_00018 0.76 -0.7 19,561 - CCNA_00018 0.79 -0.6 19,578 + CCNA_00018 0.80 +1.3 19,586 + CCNA_00018 0.81 -0.8 19,620 + CCNA_00018 0.84 +0.4 19,640 + CCNA_00018 0.86 -0.1 19,708 - -0.5 19,732 - -0.2 19,902 + CCNA_00019 0.14 +1.8 19,904 + CCNA_00019 0.14 -0.0 19,910 - CCNA_00019 0.15 +0.1 19,937 + CCNA_00019 0.19 -0.7 19,945 - CCNA_00019 0.21 -0.8 20,000 + CCNA_00019 0.29 -0.1 20,046 + CCNA_00019 0.36 +0.3 20,170 - CCNA_00019 0.56 +0.2 20,200 - CCNA_00019 0.61 -1.3 20,239 + CCNA_00019 0.67 -1.0 20,247 - CCNA_00019 0.68 -0.3 20,247 - CCNA_00019 0.68 +0.9 20,336 - CCNA_00019 0.82 -0.1 20,336 - CCNA_00019 0.82 -0.2 20,340 - CCNA_00019 0.83 +0.3 20,355 + CCNA_00019 0.85 -1.4 20,382 - CCNA_00019 0.90 +0.2 20,434 + -1.3 20,450 - -2.6 20,574 - CCNA_00020 0.58 -0.7 20,590 - CCNA_00020 0.65 -0.8 20,678 - CCNA_03911 0.11 +1.1 20,694 + CCNA_03911 0.25 -1.1 20,697 - CCNA_03911 0.28 +0.3 20,697 - CCNA_03911 0.28 +0.1 20,738 - CCNA_03911 0.64 -0.4 20,740 + CCNA_03911 0.66 -0.0 20,749 + CCNA_03911 0.74 +1.3 20,749 + CCNA_03911 0.74 +0.3 20,754 + CCNA_03911 0.78 -1.5 20,757 - CCNA_03911 0.81 +1.3 20,863 - +1.3 20,875 - -1.2 20,880 + +0.9 20,989 - +0.9 21,008 - -0.3 21,043 - -1.6 21,069 - CCNA_00021 0.10 -0.0 21,069 - CCNA_00021 0.10 -1.9 21,091 + CCNA_00021 0.11 +1.5 21,091 + CCNA_00021 0.11 -0.5 21,091 + CCNA_00021 0.11 +1.8 21,091 + CCNA_00021 0.11 -1.5 21,091 + CCNA_00021 0.11 -0.2 21,091 + CCNA_00021 0.11 +0.8 21,091 + CCNA_00021 0.11 -0.1 21,099 - CCNA_00021 0.12 +0.4 21,108 + CCNA_00021 0.12 -0.8 21,108 + CCNA_00021 0.12 -0.4 21,156 - CCNA_00021 0.14 -2.4 21,201 + CCNA_00021 0.16 -0.4 21,201 + CCNA_00021 0.16 -0.3 21,202 - CCNA_00021 0.17 -1.7 21,208 + CCNA_00021 0.17 -0.8 21,209 - CCNA_00021 0.17 +0.5 21,209 - CCNA_00021 0.17 -1.9 21,209 - CCNA_00021 0.17 +0.4 21,209 - CCNA_00021 0.17 -0.4 21,216 - CCNA_00021 0.17 +0.4 21,280 + CCNA_00021 0.20 -0.8 21,286 + CCNA_00021 0.20 -1.0 21,291 + CCNA_00021 0.21 +0.5 21,299 - CCNA_00021 0.21 -0.7 21,299 - CCNA_00021 0.21 -0.8 21,299 - CCNA_00021 0.21 -2.2 21,299 - CCNA_00021 0.21 +1.4 21,299 - CCNA_00021 0.21 +0.1 21,306 + CCNA_00021 0.21 -1.5 21,306 + CCNA_00021 0.21 -0.8 21,316 - CCNA_00021 0.22 -2.6 21,316 - CCNA_00021 0.22 -0.9 21,369 + CCNA_00021 0.24 -0.5 21,410 + CCNA_00021 0.26 -0.4 21,466 - CCNA_00021 0.29 -0.3 21,497 - CCNA_00021 0.30 -1.9 21,514 + CCNA_00021 0.31 -0.0 21,565 - CCNA_00021 0.33 +0.5 21,565 - CCNA_00021 0.33 -1.3 21,565 - CCNA_00021 0.33 -0.3 21,565 - CCNA_00021 0.33 -0.7 21,598 + CCNA_00021 0.35 -1.5 21,598 - CCNA_00021 0.35 +0.8 21,642 + CCNA_00021 0.37 -1.6 21,650 - CCNA_00021 0.37 +0.6 21,650 - CCNA_00021 0.37 -0.2
Or see this region's nucleotide sequence