Experiment: PYE with Spectinomycin 0.08 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00015 and CCNA_00016 are separated by 0 nucleotides CCNA_00016 and CCNA_00017 overlap by 4 nucleotides CCNA_00017 and CCNA_00018 are separated by 3 nucleotides
CCNA_00014: CCNA_00014 - molybdenum cofactor biosynthesis protein C, at 17,018 to 17,494
_00014
CCNA_00015: CCNA_00015 - molybdenum cofactor biosynthesis protein B, at 17,491 to 18,042
_00015
CCNA_00016: CCNA_00016 - molybdopterin converting factor, large subunit, at 18,043 to 18,495
_00016
CCNA_00017: CCNA_00017 - molybdopterin converting factor, small subunit, at 18,492 to 18,731
_00017
CCNA_00018: CCNA_00018 - molybdenum cofactor biosynthesis protein A, at 18,735 to 19,784
_00018
Position (kb) 18
19 Strain fitness (log2 ratio) -2
-1
0
1
2 at 17.525 kb on + strand at 17.567 kb on + strand, within CCNA_00015 at 17.569 kb on - strand, within CCNA_00015 at 17.580 kb on - strand, within CCNA_00015 at 17.584 kb on - strand, within CCNA_00015 at 17.694 kb on + strand, within CCNA_00015 at 17.760 kb on + strand, within CCNA_00015 at 17.760 kb on + strand, within CCNA_00015 at 17.830 kb on - strand, within CCNA_00015 at 17.840 kb on + strand, within CCNA_00015 at 17.840 kb on + strand, within CCNA_00015 at 17.843 kb on - strand, within CCNA_00015 at 17.848 kb on - strand, within CCNA_00015 at 17.848 kb on - strand, within CCNA_00015 at 17.848 kb on - strand, within CCNA_00015 at 17.886 kb on + strand, within CCNA_00015 at 17.886 kb on + strand, within CCNA_00015 at 17.886 kb on + strand, within CCNA_00015 at 17.900 kb on + strand, within CCNA_00015 at 17.900 kb on + strand, within CCNA_00015 at 17.908 kb on - strand, within CCNA_00015 at 17.908 kb on - strand, within CCNA_00015 at 17.908 kb on - strand, within CCNA_00015 at 17.923 kb on - strand, within CCNA_00015 at 17.923 kb on - strand, within CCNA_00015 at 17.923 kb on - strand, within CCNA_00015 at 17.931 kb on + strand, within CCNA_00015 at 17.966 kb on - strand, within CCNA_00015 at 17.973 kb on - strand, within CCNA_00015 at 17.981 kb on - strand, within CCNA_00015 at 17.987 kb on + strand at 17.987 kb on + strand at 17.995 kb on - strand at 18.000 kb on + strand at 18.009 kb on - strand at 18.013 kb on - strand at 18.023 kb on + strand at 18.031 kb on - strand at 18.048 kb on - strand at 18.059 kb on - strand at 18.082 kb on - strand at 18.082 kb on - strand at 18.087 kb on - strand at 18.101 kb on - strand, within CCNA_00016 at 18.110 kb on - strand, within CCNA_00016 at 18.148 kb on + strand, within CCNA_00016 at 18.148 kb on + strand, within CCNA_00016 at 18.150 kb on + strand, within CCNA_00016 at 18.150 kb on + strand, within CCNA_00016 at 18.178 kb on + strand, within CCNA_00016 at 18.188 kb on - strand, within CCNA_00016 at 18.290 kb on - strand, within CCNA_00016 at 18.367 kb on + strand, within CCNA_00016 at 18.378 kb on + strand, within CCNA_00016 at 18.381 kb on - strand, within CCNA_00016 at 18.383 kb on + strand, within CCNA_00016 at 18.443 kb on + strand, within CCNA_00016 at 18.461 kb on + strand at 18.479 kb on - strand at 18.537 kb on + strand, within CCNA_00017 at 18.592 kb on + strand, within CCNA_00017 at 18.604 kb on + strand, within CCNA_00017 at 18.609 kb on + strand, within CCNA_00017 at 18.617 kb on - strand, within CCNA_00017 at 18.619 kb on + strand, within CCNA_00017 at 18.622 kb on - strand, within CCNA_00017 at 18.622 kb on - strand, within CCNA_00017 at 18.625 kb on + strand, within CCNA_00017 at 18.657 kb on - strand, within CCNA_00017 at 18.657 kb on - strand, within CCNA_00017 at 18.741 kb on - strand at 18.802 kb on + strand at 18.802 kb on + strand at 18.810 kb on - strand at 18.810 kb on - strand at 18.910 kb on - strand, within CCNA_00018 at 18.920 kb on - strand, within CCNA_00018 at 18.920 kb on - strand, within CCNA_00018 at 18.933 kb on + strand, within CCNA_00018 at 18.941 kb on - strand, within CCNA_00018 at 18.941 kb on - strand, within CCNA_00018 at 18.941 kb on - strand, within CCNA_00018 at 18.989 kb on + strand, within CCNA_00018 at 18.992 kb on - strand, within CCNA_00018 at 18.995 kb on + strand, within CCNA_00018 at 19.064 kb on + strand, within CCNA_00018 at 19.105 kb on + strand, within CCNA_00018 at 19.113 kb on - strand, within CCNA_00018 at 19.113 kb on - strand, within CCNA_00018 at 19.115 kb on + strand, within CCNA_00018 at 19.115 kb on + strand, within CCNA_00018 at 19.123 kb on - strand, within CCNA_00018 at 19.123 kb on - strand, within CCNA_00018 at 19.133 kb on - strand, within CCNA_00018 at 19.133 kb on - strand, within CCNA_00018 at 19.143 kb on - strand, within CCNA_00018 at 19.143 kb on - strand, within CCNA_00018 at 19.161 kb on - strand, within CCNA_00018 at 19.161 kb on - strand, within CCNA_00018 at 19.161 kb on - strand, within CCNA_00018 at 19.163 kb on + strand, within CCNA_00018 at 19.163 kb on + strand, within CCNA_00018 at 19.192 kb on - strand, within CCNA_00018 at 19.200 kb on - strand, within CCNA_00018 at 19.200 kb on - strand, within CCNA_00018 at 19.251 kb on - strand, within CCNA_00018 at 19.315 kb on + strand, within CCNA_00018 at 19.335 kb on - strand, within CCNA_00018 at 19.337 kb on + strand, within CCNA_00018 at 19.340 kb on - strand, within CCNA_00018 at 19.342 kb on + strand, within CCNA_00018 at 19.342 kb on + strand, within CCNA_00018 at 19.342 kb on + strand, within CCNA_00018 at 19.342 kb on + strand, within CCNA_00018 at 19.416 kb on + strand, within CCNA_00018 at 19.441 kb on + strand, within CCNA_00018 at 19.444 kb on - strand, within CCNA_00018 at 19.528 kb on + strand, within CCNA_00018 at 19.561 kb on - strand, within CCNA_00018 at 19.578 kb on + strand, within CCNA_00018 at 19.586 kb on + strand, within CCNA_00018 at 19.620 kb on + strand, within CCNA_00018 at 19.640 kb on + strand, within CCNA_00018 at 19.708 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Spectinomycin 0.08 mg/ml remove 17,525 + -0.6 17,567 + CCNA_00015 0.14 -0.5 17,569 - CCNA_00015 0.14 -1.1 17,580 - CCNA_00015 0.16 -0.8 17,584 - CCNA_00015 0.17 +0.2 17,694 + CCNA_00015 0.37 -0.6 17,760 + CCNA_00015 0.49 +1.9 17,760 + CCNA_00015 0.49 -0.6 17,830 - CCNA_00015 0.61 -1.4 17,840 + CCNA_00015 0.63 -2.0 17,840 + CCNA_00015 0.63 +0.5 17,843 - CCNA_00015 0.64 -1.0 17,848 - CCNA_00015 0.65 -0.2 17,848 - CCNA_00015 0.65 -1.0 17,848 - CCNA_00015 0.65 +0.5 17,886 + CCNA_00015 0.72 -0.1 17,886 + CCNA_00015 0.72 +0.3 17,886 + CCNA_00015 0.72 -0.3 17,900 + CCNA_00015 0.74 +1.2 17,900 + CCNA_00015 0.74 +1.1 17,908 - CCNA_00015 0.76 -1.2 17,908 - CCNA_00015 0.76 -1.9 17,908 - CCNA_00015 0.76 -1.0 17,923 - CCNA_00015 0.78 -1.5 17,923 - CCNA_00015 0.78 -0.7 17,923 - CCNA_00015 0.78 -0.6 17,931 + CCNA_00015 0.80 -1.5 17,966 - CCNA_00015 0.86 -0.2 17,973 - CCNA_00015 0.87 -1.3 17,981 - CCNA_00015 0.89 +0.7 17,987 + -1.4 17,987 + -0.8 17,995 - +0.1 18,000 + -0.1 18,009 - +0.2 18,013 - -0.6 18,023 + -0.8 18,031 - -0.0 18,048 - +0.5 18,059 - -0.4 18,082 - +1.1 18,082 - -0.3 18,087 - -0.9 18,101 - CCNA_00016 0.13 -1.0 18,110 - CCNA_00016 0.15 +0.5 18,148 + CCNA_00016 0.23 -0.6 18,148 + CCNA_00016 0.23 -1.1 18,150 + CCNA_00016 0.24 -1.7 18,150 + CCNA_00016 0.24 -1.7 18,178 + CCNA_00016 0.30 -0.3 18,188 - CCNA_00016 0.32 -1.2 18,290 - CCNA_00016 0.55 -0.4 18,367 + CCNA_00016 0.72 -0.2 18,378 + CCNA_00016 0.74 +1.4 18,381 - CCNA_00016 0.75 -0.9 18,383 + CCNA_00016 0.75 -0.2 18,443 + CCNA_00016 0.88 +1.0 18,461 + +0.8 18,479 - -0.5 18,537 + CCNA_00017 0.19 +0.2 18,592 + CCNA_00017 0.42 +1.2 18,604 + CCNA_00017 0.47 +0.3 18,609 + CCNA_00017 0.49 -0.1 18,617 - CCNA_00017 0.52 -1.1 18,619 + CCNA_00017 0.53 -0.9 18,622 - CCNA_00017 0.54 -1.6 18,622 - CCNA_00017 0.54 -1.2 18,625 + CCNA_00017 0.55 -2.0 18,657 - CCNA_00017 0.69 -1.3 18,657 - CCNA_00017 0.69 -0.2 18,741 - +0.1 18,802 + +0.1 18,802 + -1.0 18,810 - -0.4 18,810 - -0.9 18,910 - CCNA_00018 0.17 -0.0 18,920 - CCNA_00018 0.18 -0.6 18,920 - CCNA_00018 0.18 +0.2 18,933 + CCNA_00018 0.19 +0.1 18,941 - CCNA_00018 0.20 -0.6 18,941 - CCNA_00018 0.20 -2.2 18,941 - CCNA_00018 0.20 -1.0 18,989 + CCNA_00018 0.24 +0.3 18,992 - CCNA_00018 0.24 +0.3 18,995 + CCNA_00018 0.25 +1.5 19,064 + CCNA_00018 0.31 -0.4 19,105 + CCNA_00018 0.35 -0.8 19,113 - CCNA_00018 0.36 -1.5 19,113 - CCNA_00018 0.36 -0.9 19,115 + CCNA_00018 0.36 +1.0 19,115 + CCNA_00018 0.36 -0.6 19,123 - CCNA_00018 0.37 -0.2 19,123 - CCNA_00018 0.37 -1.0 19,133 - CCNA_00018 0.38 -0.1 19,133 - CCNA_00018 0.38 -0.9 19,143 - CCNA_00018 0.39 +1.2 19,143 - CCNA_00018 0.39 -0.6 19,161 - CCNA_00018 0.41 -0.1 19,161 - CCNA_00018 0.41 -0.8 19,161 - CCNA_00018 0.41 -0.1 19,163 + CCNA_00018 0.41 -0.1 19,163 + CCNA_00018 0.41 -0.9 19,192 - CCNA_00018 0.44 -0.8 19,200 - CCNA_00018 0.44 -0.2 19,200 - CCNA_00018 0.44 -0.5 19,251 - CCNA_00018 0.49 -0.3 19,315 + CCNA_00018 0.55 -0.1 19,335 - CCNA_00018 0.57 -0.1 19,337 + CCNA_00018 0.57 -0.0 19,340 - CCNA_00018 0.58 -0.8 19,342 + CCNA_00018 0.58 -0.7 19,342 + CCNA_00018 0.58 -1.4 19,342 + CCNA_00018 0.58 -0.6 19,342 + CCNA_00018 0.58 +0.4 19,416 + CCNA_00018 0.65 +1.1 19,441 + CCNA_00018 0.67 +1.3 19,444 - CCNA_00018 0.68 +0.6 19,528 + CCNA_00018 0.76 -0.7 19,561 - CCNA_00018 0.79 -0.6 19,578 + CCNA_00018 0.80 +1.3 19,586 + CCNA_00018 0.81 -0.8 19,620 + CCNA_00018 0.84 +0.4 19,640 + CCNA_00018 0.86 -0.1 19,708 - -0.5
Or see this region's nucleotide sequence