Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS33020

Experiment: L-Citrulline (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS33010 and BPHYT_RS33015 are separated by 117 nucleotidesBPHYT_RS33015 and BPHYT_RS33020 are separated by 3 nucleotidesBPHYT_RS33020 and BPHYT_RS33025 are separated by 522 nucleotides BPHYT_RS33010: BPHYT_RS33010 - hypothetical protein, at 2,984,845 to 2,985,345 _RS33010 BPHYT_RS33015: BPHYT_RS33015 - hypothetical protein, at 2,985,463 to 2,985,960 _RS33015 BPHYT_RS33020: BPHYT_RS33020 - hypothetical protein, at 2,985,964 to 2,986,740 _RS33020 BPHYT_RS33025: BPHYT_RS33025 - hypothetical protein, at 2,987,263 to 2,988,075 _RS33025 Position (kb) 2985 2986 2987Strain fitness (log2 ratio) -1 0 1 2at 2984.978 kb on - strand, within BPHYT_RS33010at 2985.353 kb on - strandat 2985.422 kb on + strandat 2985.697 kb on + strand, within BPHYT_RS33015at 2986.236 kb on - strand, within BPHYT_RS33020at 2986.679 kb on + strandat 2986.680 kb on - strandat 2986.680 kb on - strandat 2986.884 kb on + strandat 2986.885 kb on - strandat 2987.001 kb on - strandat 2987.077 kb on - strandat 2987.148 kb on + strandat 2987.215 kb on + strandat 2987.215 kb on + strandat 2987.299 kb on + strandat 2987.369 kb on + strand, within BPHYT_RS33025

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Citrulline (N)
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2,984,978 - BPHYT_RS33010 0.27 +0.2
2,985,353 - -0.7
2,985,422 + +0.0
2,985,697 + BPHYT_RS33015 0.47 +0.5
2,986,236 - BPHYT_RS33020 0.35 +0.6
2,986,679 + -1.5
2,986,680 - +1.8
2,986,680 - +0.1
2,986,884 + -0.1
2,986,885 - -0.1
2,987,001 - +0.1
2,987,077 - -0.7
2,987,148 + -1.6
2,987,215 + +0.3
2,987,215 + +0.1
2,987,299 + -0.7
2,987,369 + BPHYT_RS33025 0.13 +1.1

Or see this region's nucleotide sequence