Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS27675

Experiment: L-Citrulline (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS27665 and BPHYT_RS27670 are separated by 305 nucleotidesBPHYT_RS27670 and BPHYT_RS27675 are separated by 114 nucleotidesBPHYT_RS27675 and BPHYT_RS27680 are separated by 25 nucleotides BPHYT_RS27665: BPHYT_RS27665 - flavodoxin, at 1,773,226 to 1,773,738 _RS27665 BPHYT_RS27670: BPHYT_RS27670 - hypothetical protein, at 1,774,044 to 1,774,280 _RS27670 BPHYT_RS27675: BPHYT_RS27675 - amino acid APC transporter, at 1,774,395 to 1,775,876 _RS27675 BPHYT_RS27680: BPHYT_RS27680 - arginine deiminase, at 1,775,902 to 1,777,119 _RS27680 Position (kb) 1774 1775 1776Strain fitness (log2 ratio) -1 0 1at 1773.461 kb on + strand, within BPHYT_RS27665at 1773.524 kb on + strand, within BPHYT_RS27665at 1773.804 kb on + strandat 1773.804 kb on + strandat 1773.804 kb on + strandat 1773.805 kb on - strandat 1773.938 kb on + strandat 1773.939 kb on - strandat 1774.013 kb on - strandat 1774.359 kb on + strandat 1774.360 kb on - strandat 1774.368 kb on + strandat 1774.677 kb on + strand, within BPHYT_RS27675at 1774.677 kb on + strand, within BPHYT_RS27675at 1774.683 kb on + strand, within BPHYT_RS27675at 1774.811 kb on - strand, within BPHYT_RS27675at 1775.035 kb on + strand, within BPHYT_RS27675at 1775.574 kb on + strand, within BPHYT_RS27675at 1775.575 kb on - strand, within BPHYT_RS27675at 1775.728 kb on - strandat 1775.874 kb on + strandat 1776.020 kb on + strandat 1776.456 kb on + strand, within BPHYT_RS27680at 1776.460 kb on + strand, within BPHYT_RS27680at 1776.461 kb on - strand, within BPHYT_RS27680

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Citrulline (N)
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1,773,461 + BPHYT_RS27665 0.46 -1.3
1,773,524 + BPHYT_RS27665 0.58 +1.4
1,773,804 + +0.1
1,773,804 + +0.8
1,773,804 + +0.2
1,773,805 - +0.0
1,773,938 + -0.0
1,773,939 - -0.1
1,774,013 - -1.0
1,774,359 + -0.3
1,774,360 - -0.3
1,774,368 + -0.7
1,774,677 + BPHYT_RS27675 0.19 -0.4
1,774,677 + BPHYT_RS27675 0.19 +0.0
1,774,683 + BPHYT_RS27675 0.19 +0.2
1,774,811 - BPHYT_RS27675 0.28 -0.2
1,775,035 + BPHYT_RS27675 0.43 +0.9
1,775,574 + BPHYT_RS27675 0.80 -0.8
1,775,575 - BPHYT_RS27675 0.80 -0.2
1,775,728 - +0.6
1,775,874 + -0.9
1,776,020 + +0.1
1,776,456 + BPHYT_RS27680 0.45 +1.1
1,776,460 + BPHYT_RS27680 0.46 -0.0
1,776,461 - BPHYT_RS27680 0.46 -1.6

Or see this region's nucleotide sequence