Experiment: L-Citrulline (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS27330 and BPHYT_RS27335 are separated by 72 nucleotides BPHYT_RS27335 and BPHYT_RS27340 overlap by 4 nucleotides BPHYT_RS27340 and BPHYT_RS27345 overlap by 4 nucleotides
BPHYT_RS27330: BPHYT_RS27330 - hypothetical protein, at 1,707,200 to 1,707,388
_RS27330
BPHYT_RS27335: BPHYT_RS27335 - cytochrome C, at 1,707,461 to 1,708,738
_RS27335
BPHYT_RS27340: BPHYT_RS27340 - (2Fe-2S)-binding protein, at 1,708,735 to 1,709,247
_RS27340
BPHYT_RS27345: BPHYT_RS27345 - aldehyde dehydrogenase, at 1,709,244 to 1,711,508
_RS27345
Position (kb)
1707
1708
1709 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1706.731 kb on + strand at 1706.763 kb on + strand at 1706.764 kb on - strand at 1707.007 kb on + strand at 1707.122 kb on - strand at 1707.324 kb on + strand, within BPHYT_RS27330 at 1707.325 kb on - strand, within BPHYT_RS27330 at 1707.415 kb on - strand at 1707.470 kb on - strand at 1707.713 kb on + strand, within BPHYT_RS27335 at 1707.839 kb on - strand, within BPHYT_RS27335 at 1708.593 kb on - strand, within BPHYT_RS27335 at 1708.616 kb on + strand at 1708.802 kb on - strand, within BPHYT_RS27340
Per-strain Table
Position Strand Gene LocusTag Fraction L-Citrulline (N) remove 1,706,731 + +0.5 1,706,763 + +0.6 1,706,764 - +0.1 1,707,007 + +0.1 1,707,122 - -1.8 1,707,324 + BPHYT_RS27330 0.66 +1.4 1,707,325 - BPHYT_RS27330 0.66 +0.6 1,707,415 - +0.1 1,707,470 - +2.4 1,707,713 + BPHYT_RS27335 0.20 -1.6 1,707,839 - BPHYT_RS27335 0.30 -0.1 1,708,593 - BPHYT_RS27335 0.89 +0.0 1,708,616 + +0.2 1,708,802 - BPHYT_RS27340 0.13 +1.1
Or see this region's nucleotide sequence