Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS26005

Experiment: L-Citrulline (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS26000 and BPHYT_RS26005 are separated by 156 nucleotidesBPHYT_RS26005 and BPHYT_RS26010 are separated by 505 nucleotides BPHYT_RS26000: BPHYT_RS26000 - xylose isomerase, at 1,409,755 to 1,410,657 _RS26000 BPHYT_RS26005: BPHYT_RS26005 - MarR family transcriptional regulator, at 1,410,814 to 1,411,182 _RS26005 BPHYT_RS26010: BPHYT_RS26010 - ABC transporter substrate-binding protein, at 1,411,688 to 1,412,698 _RS26010 Position (kb) 1410 1411 1412Strain fitness (log2 ratio) -1 0 1at 1409.868 kb on + strand, within BPHYT_RS26000at 1409.868 kb on + strand, within BPHYT_RS26000at 1409.869 kb on - strand, within BPHYT_RS26000at 1409.869 kb on - strand, within BPHYT_RS26000at 1409.925 kb on - strand, within BPHYT_RS26000at 1410.461 kb on + strand, within BPHYT_RS26000at 1410.728 kb on + strandat 1410.780 kb on + strandat 1410.967 kb on + strand, within BPHYT_RS26005at 1411.264 kb on - strandat 1411.439 kb on + strandat 1411.812 kb on - strand, within BPHYT_RS26010at 1411.907 kb on + strand, within BPHYT_RS26010

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Citrulline (N)
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1,409,868 + BPHYT_RS26000 0.13 -0.6
1,409,868 + BPHYT_RS26000 0.13 -0.9
1,409,869 - BPHYT_RS26000 0.13 -0.1
1,409,869 - BPHYT_RS26000 0.13 +1.1
1,409,925 - BPHYT_RS26000 0.19 +0.5
1,410,461 + BPHYT_RS26000 0.78 -0.7
1,410,728 + +0.1
1,410,780 + +0.1
1,410,967 + BPHYT_RS26005 0.41 -1.1
1,411,264 - +0.8
1,411,439 + +0.7
1,411,812 - BPHYT_RS26010 0.12 -0.1
1,411,907 + BPHYT_RS26010 0.22 +0.0

Or see this region's nucleotide sequence