Experiment: L-Citrulline (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS14895 and BPHYT_RS14900 are separated by 19 nucleotides BPHYT_RS14900 and BPHYT_RS14905 are separated by 52 nucleotides
BPHYT_RS14895: BPHYT_RS14895 - 3-phosphoshikimate 1-carboxyvinyltransferase, at 3,387,387 to 3,388,691
_RS14895
BPHYT_RS14900: BPHYT_RS14900 - prephenate dehydrogenase, at 3,388,711 to 3,389,652
_RS14900
BPHYT_RS14905: BPHYT_RS14905 - Aromatic-amino-acid transaminase (EC 2.6.1.57) (from data) , at 3,389,705 to 3,390,817
_RS14905
Position (kb)
3388
3389
3390 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 3388.364 kb on - strand, within BPHYT_RS14895 at 3389.193 kb on - strand, within BPHYT_RS14900 at 3389.626 kb on - strand at 3389.657 kb on - strand at 3389.800 kb on - strand at 3389.917 kb on - strand, within BPHYT_RS14905 at 3390.199 kb on - strand, within BPHYT_RS14905 at 3390.199 kb on - strand, within BPHYT_RS14905 at 3390.220 kb on - strand, within BPHYT_RS14905 at 3390.229 kb on - strand, within BPHYT_RS14905 at 3390.394 kb on - strand, within BPHYT_RS14905 at 3390.394 kb on - strand, within BPHYT_RS14905 at 3390.451 kb on - strand, within BPHYT_RS14905 at 3390.451 kb on - strand, within BPHYT_RS14905 at 3390.475 kb on - strand, within BPHYT_RS14905 at 3390.574 kb on - strand, within BPHYT_RS14905 at 3390.630 kb on - strand, within BPHYT_RS14905 at 3390.630 kb on - strand, within BPHYT_RS14905
Per-strain Table
Position Strand Gene LocusTag Fraction L-Citrulline (N) remove 3,388,364 - BPHYT_RS14895 0.75 -4.1 3,389,193 - BPHYT_RS14900 0.51 -1.4 3,389,626 - -0.4 3,389,657 - +1.1 3,389,800 - +0.3 3,389,917 - BPHYT_RS14905 0.19 +0.3 3,390,199 - BPHYT_RS14905 0.44 -0.1 3,390,199 - BPHYT_RS14905 0.44 -0.2 3,390,220 - BPHYT_RS14905 0.46 -0.4 3,390,229 - BPHYT_RS14905 0.47 -1.4 3,390,394 - BPHYT_RS14905 0.62 +1.4 3,390,394 - BPHYT_RS14905 0.62 +0.4 3,390,451 - BPHYT_RS14905 0.67 -0.2 3,390,451 - BPHYT_RS14905 0.67 +0.2 3,390,475 - BPHYT_RS14905 0.69 +0.5 3,390,574 - BPHYT_RS14905 0.78 +0.7 3,390,630 - BPHYT_RS14905 0.83 +0.8 3,390,630 - BPHYT_RS14905 0.83 -1.5
Or see this region's nucleotide sequence