Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS10275

Experiment: L-Citrulline (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS10270 and BPHYT_RS10275 are separated by 97 nucleotidesBPHYT_RS10275 and BPHYT_RS10280 are separated by 240 nucleotides BPHYT_RS10270: BPHYT_RS10270 - D-amino acid dehydrogenase, at 2,333,918 to 2,335,159 _RS10270 BPHYT_RS10275: BPHYT_RS10275 - ABC transporter substrate-binding protein, at 2,335,257 to 2,336,045 _RS10275 BPHYT_RS10280: BPHYT_RS10280 - ornithine cyclodeaminase, at 2,336,286 to 2,337,254 _RS10280 Position (kb) 2335 2336 2337Strain fitness (log2 ratio) -1 0 1 2at 2334.273 kb on + strand, within BPHYT_RS10270at 2334.328 kb on - strand, within BPHYT_RS10270at 2334.339 kb on + strand, within BPHYT_RS10270at 2335.535 kb on - strand, within BPHYT_RS10275at 2335.555 kb on + strand, within BPHYT_RS10275at 2335.555 kb on + strand, within BPHYT_RS10275at 2335.680 kb on - strand, within BPHYT_RS10275at 2335.712 kb on - strand, within BPHYT_RS10275at 2336.466 kb on - strand, within BPHYT_RS10280at 2336.469 kb on + strand, within BPHYT_RS10280at 2336.469 kb on + strand, within BPHYT_RS10280at 2336.619 kb on - strand, within BPHYT_RS10280at 2336.894 kb on + strand, within BPHYT_RS10280at 2336.894 kb on + strand, within BPHYT_RS10280

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Citrulline (N)
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2,334,273 + BPHYT_RS10270 0.29 +0.6
2,334,328 - BPHYT_RS10270 0.33 -1.1
2,334,339 + BPHYT_RS10270 0.34 +2.4
2,335,535 - BPHYT_RS10275 0.35 +0.0
2,335,555 + BPHYT_RS10275 0.38 +0.3
2,335,555 + BPHYT_RS10275 0.38 -0.7
2,335,680 - BPHYT_RS10275 0.54 -0.2
2,335,712 - BPHYT_RS10275 0.58 -0.5
2,336,466 - BPHYT_RS10280 0.19 -0.6
2,336,469 + BPHYT_RS10280 0.19 +0.2
2,336,469 + BPHYT_RS10280 0.19 -0.3
2,336,619 - BPHYT_RS10280 0.34 -0.7
2,336,894 + BPHYT_RS10280 0.63 +0.5
2,336,894 + BPHYT_RS10280 0.63 -0.0

Or see this region's nucleotide sequence